Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe02g00155	ATGGCTAATCCTCAGGCGCCGGGGCATCGGAGAGGCAGGGCAGCTCAGGCGCATCCCCCTGTGGTCCGTGGTAGGGTTCCATTGAGAAAGTTACTCAGAGTTACATCGGTGGCTTGTGGAATTCAATTCGGATGGGCTCTCCAGCTCTCTCTTTTGACCCCCTACGTGCAGCAGCTTGGAATTCCTCACGCGTGGGCTAGCGTCATATGGCTCTGCGGACCTCTCTCGGGACTTTTGGTTCAGCCGCTGGTCGGCCACTTGAGCGACCGGTGCACGAGTCGGTTTGGCAGGCGGAGGCCTTTCATTGCCGCCGGAGCGGTGGCGATTATTATAGCTGTATTGGTAATCGGACATTCGGCGGACATTGGATGGTTGATCGGCGATAGAGGTAAGGTTAGGCCAGCTGCAGTTGCGATCTTTGTCCTCGGGTTTTGGATCCTTGATGTTGCCAATAACATGACGCAAGGACCCTGCAGGGCCCTACTTGCCGATCTTACCGGAAATGATCATCGGAGGACGCGGGTGGCTAATGCTTATTTTTCTCTTTTTATGGCTGTTGGCAATATTCTTGGTTTTGCTACTGGATCCTACAGTAAATGGTTCGAGATTTTCCCCTTTACTCTTACAGCTGCTTGCAATGCAAGTTGTGCAAATCTCAAGGCAGCTTTTTATCTTGATGTTGTGTTCGTGGCAGTCACGACATATCTGAGCATATCTGCAGCTCAAGAATCAACTTTCACTCCAAGTGAGGGAGCTGCTCTAGTTGCTGGAGAAAGGTCGGAACAGACGAGCAATTCTCAAGAAGCTTTCCTGTGGGAGCTTTTTGGCACATTTAGATACTTCTCAGGGTCCATATGGATCATTTTGTTGGTCACCGCACTGACCTGGATTGGTTGGTTTCCTTTTCTTCTCTTTGATACTGATTGGATGGGTAGAGAGATTTTTGGAGGTGAGCCAAATGAAGGGCTGAGTTATGATACTGGCGTTAGAGTTGGTGCACTTGGTCTGATGTTAAACTCTGTTGTTCTCGGAATAACTTCATTGCTCATGGAGAAGCTCTGCAGAAAGTGGGGGGCGGGTATTGTGTGGGGGGCATCAAACATCATCATGGCTCTTTGCTTTCTTGCAATGCTTGTTGTTACATTTATGGCAAAGAGGATCAAGAATGTTGCTGATCAGCCACCTCCAGATGGTATTGTGGCAGCTGGATTGATAATTTTTTCCATTCTGGGTGTTCCATTGGCAATCACTTACAGTGTTCCTTATGCCCTGATTTCAACACACATTGGTTCCCTCGGACTTGGACAGGGATTATGCATGGGGGTACTGAATCTAGCTATAGTAATTCCACAGGTTATAGTGTCCCTGGGAAGTGGACCATGGGATCAGCTGTTTGGAGGTGGAAACTCGCCAGCCTTTGCTGTGGCAGCCGTTGCAGCATTTGCTAGTGGACTTGTCGCCATATTGGTCATCCCTAAATCCGGCGCTCGGAAAGTTAGAGCACACACTTGA	1512	49.27	MANPQAPGHRRGRAAQAHPPVVRGRVPLRKLLRVTSVACGIQFGWALQLSLLTPYVQQLGIPHAWASVIWLCGPLSGLLVQPLVGHLSDRCTSRFGRRRPFIAAGAVAIIIAVLVIGHSADIGWLIGDRGKVRPAAVAIFVLGFWILDVANNMTQGPCRALLADLTGNDHRRTRVANAYFSLFMAVGNILGFATGSYSKWFEIFPFTLTAACNASCANLKAAFYLDVVFVAVTTYLSISAAQESTFTPSEGAALVAGERSEQTSNSQEAFLWELFGTFRYFSGSIWIILLVTALTWIGWFPFLLFDTDWMGREIFGGEPNEGLSYDTGVRVGALGLMLNSVVLGITSLLMEKLCRKWGAGIVWGASNIIMALCFLAMLVVTFMAKRIKNVADQPPPDGIVAAGLIIFSILGVPLAITYSVPYALISTHIGSLGLGQGLCMGVLNLAIVIPQVIVSLGSGPWDQLFGGGNSPAFAVAAVAAFASGLVAILVIPKSGARKVRAHT	503

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
2	1078796	1081509	-	Bpe008006.1	Bpe02g00155	98304

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bpe02g00155	503	Pfam	MFS/sugar transport protein	46	193	-	-
Bpe02g00155	503	CDD	MFS_SLC45_SUC	31	470	-	-
Bpe02g00155	503	PANTHER	SUCROSE/H+ SYMPORTER, PLANT, MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED	11	501	-	-
Bpe02g00155	503	PANTHER	SUGAR TRANSPORTER	11	501	-	-
Bpe02g00155	503	SUPERFAMILY	MFS general substrate transporter	31	497	IPR036259	-
Bpe02g00155	503	Gene3D	MFS general substrate transporter like domains	28	491	IPR036259	-
Bpe02g00155	503	TIGRFAM	GPH_sucrose: sucrose/H+ symporter	26	494	IPR005989	GO:0005887\|GO:0008515\|GO:0015770

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe02g00155	K15378	SLC45A1_2_4; solute carrier family 45, member 1/2/4	-	zju:107421393	781.556

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe02g00155	Bpe-Chr2:1078796	Bpe02g01667	Bpe-Chr2:19344374	2.21E-163	dispersed
	Bpe02g00155	Bpe-Chr2:1078796	Bpe14g00417	Bpe-Chr14:3854433	1.99E-165	transposed

Deco-Alignment

Select	Vvi1	Blo1	Blo2	Bda1	Bda2	Bpe1	Bpe2	Bma1	Bma2	Cmo1	Cmo2	Cma1	Cma2	Car1	Car2	Sed1	Cpe1	Cpe2	Bhi1	Tan1	Cmetu1	Lac1	Hepe1	Mch1	Lcy1	Cla1	Cam1	Cec1	Cco1	Clacu1	Cmu1	Cre1	Cone1	Cone2	Cone3	Cone4	Lsi1	Csa1	Chy1	Cme1	Blo3	Blo4	Bda3	Bda4	Bpe3	Bpe4	Bma3	Bma4	Sed2	Cmo3	Cmo4	Cma3	Cma4	Car3	Car4	Cpe3	Cpe4	Bhi2	Tan2	Cmetu2	Lac2	Hepe2	Mch2	Lcy2	Cla2	Cam2	Cec2	Cco2	Clacu2	Cmu2	Cre2	Lsi2	Csa2	Chy2	Cme2
	Vvi18g575	Blo01g01786	.	.	.	Bpe02g00155	.	.	Bma01g02572	.	Cmo12g00183	.	.	.	Car12g00209	Sed08g1987	.	Cpe07g00193	Bhi04g00897	Tan02g2516	Cmetu03g0103	.	Hepe10g0399	.	Lcy13g1450	Cla08g01190	Cam08g1654	Cec08g1231	Cco08g1350	Clacu08g1351	.	Cre08g1137	.	.	.	.	.	.	.	Cme03g01774	.	.	Bda11g00815	.	.	.	.	Bma02g00169	.	.	.	Cma12g00228	.	Car05g00514	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Lsi08g01052	Csa02g02236	Chy03g01280	.
	Vvi18g1266	Blo01g01786	.	.	.	Bpe02g00155	.	.	Bma01g02572	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Bda11g00815	Bda13g01439	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Bpe14g00418	.	10	492	Sucrose Transporter Gene Family	AT1G22710	63.7	5.1e-178	620.9
Bpe14g00417	.	17	480	Sucrose Transporter Gene Family	AT1G22710	65.8	4.4e-177	617.8
Bpe02g01667	.	17	490	Sucrose Transporter Gene Family	AT1G22710	64.5	4.8e-176	614.4
Bpe14g00420	.	17	477	Sucrose Transporter Gene Family	AT1G22710	62.8	2.0e-169	592.4
Bpe02g00155	.	28	492	Sucrose Transporter Gene Family	AT1G22710	53.5	1.8e-146	516.2
Bpe14g00427	.	2	355	Sucrose Transporter Gene Family	AT1G22710	58.4	3.5e-118	422.2
Bpe14g00417	.	9	477	Sucrose Transporter Gene Family	AT2G14670	62.6	3.1e-172	601.7
Bpe02g01667	.	15	477	Sucrose Transporter Gene Family	AT2G14670	64.1	5.3e-172	600.9
Bpe14g00418	.	9	477	Sucrose Transporter Gene Family	AT2G14670	62.2	2.9e-170	595.1
Bpe14g00420	.	8	477	Sucrose Transporter Gene Family	AT2G14670	60.6	1.9e-166	582.4
Bpe02g00155	.	24	492	Sucrose Transporter Gene Family	AT2G14670	54.4	1.7e-146	516.2
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT2G14670	56.9	7.8e-115	411.0
Bpe14g00417	.	10	400	Sucrose Transporter Gene Family	AT1G66570	61.6	3.1e-142	501.9
Bpe02g01667	.	15	405	Sucrose Transporter Gene Family	AT1G66570	63.1	5.3e-142	501.1
Bpe14g00418	.	10	405	Sucrose Transporter Gene Family	AT1G66570	61.1	3.4e-141	498.4
Bpe14g00420	.	15	405	Sucrose Transporter Gene Family	AT1G66570	60.8	4.6e-138	488.0
Bpe02g00155	.	24	420	Sucrose Transporter Gene Family	AT1G66570	53.0	2.3e-121	432.6
Bpe14g00427	.	1	283	Sucrose Transporter Gene Family	AT1G66570	55.4	2.2e-87	319.7
Bpe02g02352	.	155	611	Sucrose Transporter Gene Family	AT2G02860	69.9	2.0e-184	642.1
Bpe02g01667	.	6	477	Sucrose Transporter Gene Family	AT5G06170	62.7	1.2e-163	573.2
Bpe14g00418	.	8	477	Sucrose Transporter Gene Family	AT5G06170	60.5	2.1e-160	562.4
Bpe14g00417	.	6	477	Sucrose Transporter Gene Family	AT5G06170	61.0	2.7e-160	562.0
Bpe14g00420	.	5	477	Sucrose Transporter Gene Family	AT5G06170	58.7	1.8e-156	549.3
Bpe02g00155	.	27	492	Sucrose Transporter Gene Family	AT5G06170	51.3	2.0e-134	476.1
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT5G06170	53.8	3.6e-104	375.6
Bpe14g00417	.	9	477	Sucrose Transporter Gene Family	AT5G43610	61.8	1.6e-168	589.3
Bpe02g01667	.	15	477	Sucrose Transporter Gene Family	AT5G43610	63.0	3.5e-168	588.2
Bpe14g00418	.	9	477	Sucrose Transporter Gene Family	AT5G43610	61.4	1.8e-167	585.9
Bpe14g00420	.	9	477	Sucrose Transporter Gene Family	AT5G43610	59.7	1.0e-162	570.1
Bpe02g00155	.	22	492	Sucrose Transporter Gene Family	AT5G43610	53.1	6.7e-143	504.2
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT5G43610	56.6	1.1e-113	407.1
Bpe02g00155	.	23	498	Sucrose Transporter Gene Family	AT1G09960	73.2	1.9e-204	708.8
Bpe14g00417	.	20	482	Sucrose Transporter Gene Family	AT1G09960	52.8	1.3e-136	483.4
Bpe02g01667	.	12	482	Sucrose Transporter Gene Family	AT1G09960	52.3	2.4e-135	479.2
Bpe14g00420	.	11	483	Sucrose Transporter Gene Family	AT1G09960	50.6	7.7e-134	474.2
Bpe14g00417	.	10	491	Sucrose Transporter Gene Family	AT1G71880	61.6	9.4e-172	600.1
Bpe14g00418	.	8	491	Sucrose Transporter Gene Family	AT1G71880	61.3	1.2e-171	599.7
Bpe02g01667	.	9	490	Sucrose Transporter Gene Family	AT1G71880	61.3	6.7e-170	594.0
Bpe14g00420	.	10	477	Sucrose Transporter Gene Family	AT1G71880	60.4	1.8e-162	569.3
Bpe02g00155	.	27	492	Sucrose Transporter Gene Family	AT1G71880	54.5	3.9e-141	498.4
Bpe14g00427	.	1	369	Sucrose Transporter Gene Family	AT1G71880	56.4	1.4e-114	410.2
Bpe02g01667	.	15	480	Sucrose Transporter Gene Family	AT1G71890	62.2	3.5e-166	581.6
Bpe14g00417	.	10	492	Sucrose Transporter Gene Family	AT1G71890	59.5	5.9e-166	580.9
Bpe14g00418	.	8	492	Sucrose Transporter Gene Family	AT1G71890	59.3	5.0e-165	577.8
Bpe14g00420	.	15	477	Sucrose Transporter Gene Family	AT1G71890	60.0	2.0e-161	565.8
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT1G71890	56.4	1.2e-110	397.1
Bpe14g00417	.	10	491	Sucrose Transporter Gene Family	AT1G71880	61.6	9.4e-172	600.1
Bpe14g00418	.	8	491	Sucrose Transporter Gene Family	AT1G71880	61.3	1.2e-171	599.7
Bpe02g01667	.	9	490	Sucrose Transporter Gene Family	AT1G71880	61.3	6.7e-170	594.0
Bpe14g00420	.	10	477	Sucrose Transporter Gene Family	AT1G71880	60.4	1.8e-162	569.3
Bpe02g00155	.	27	492	Sucrose Transporter Gene Family	AT1G71880	54.5	3.9e-141	498.4
Bpe14g00427	.	1	369	Sucrose Transporter Gene Family	AT1G71880	56.4	1.4e-114	410.2
Bpe14g00418	.	10	492	Sucrose Transporter Gene Family	AT1G22710	63.7	5.1e-178	620.9
Bpe14g00417	.	17	480	Sucrose Transporter Gene Family	AT1G22710	65.8	4.4e-177	617.8
Bpe02g01667	.	17	490	Sucrose Transporter Gene Family	AT1G22710	64.5	4.8e-176	614.4
Bpe14g00420	.	17	477	Sucrose Transporter Gene Family	AT1G22710	62.8	2.0e-169	592.4
Bpe02g00155	.	28	492	Sucrose Transporter Gene Family	AT1G22710	53.5	1.8e-146	516.2
Bpe14g00427	.	2	355	Sucrose Transporter Gene Family	AT1G22710	58.4	3.5e-118	422.2
Bpe02g02352	.	155	611	Sucrose Transporter Gene Family	AT2G02860	69.9	2.0e-184	642.1
Bpe02g00155	.	23	498	Sucrose Transporter Gene Family	AT1G09960	73.2	1.9e-204	708.8
Bpe14g00417	.	20	482	Sucrose Transporter Gene Family	AT1G09960	52.8	1.3e-136	483.4
Bpe02g01667	.	12	482	Sucrose Transporter Gene Family	AT1G09960	52.3	2.4e-135	479.2
Bpe14g00420	.	11	483	Sucrose Transporter Gene Family	AT1G09960	50.6	7.7e-134	474.2
Bpe02g01667	.	15	480	Sucrose Transporter Gene Family	AT1G71890	62.2	3.5e-166	581.6
Bpe14g00417	.	10	492	Sucrose Transporter Gene Family	AT1G71890	59.5	5.9e-166	580.9
Bpe14g00418	.	8	492	Sucrose Transporter Gene Family	AT1G71890	59.3	5.0e-165	577.8
Bpe14g00420	.	15	477	Sucrose Transporter Gene Family	AT1G71890	60.0	2.0e-161	565.8
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT1G71890	56.4	1.2e-110	397.1
Bpe14g00417	.	9	477	Sucrose Transporter Gene Family	AT5G43610	61.8	1.6e-168	589.3
Bpe02g01667	.	15	477	Sucrose Transporter Gene Family	AT5G43610	63.0	3.5e-168	588.2
Bpe14g00418	.	9	477	Sucrose Transporter Gene Family	AT5G43610	61.4	1.8e-167	585.9
Bpe14g00420	.	9	477	Sucrose Transporter Gene Family	AT5G43610	59.7	1.0e-162	570.1
Bpe02g00155	.	22	492	Sucrose Transporter Gene Family	AT5G43610	53.1	6.7e-143	504.2
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT5G43610	56.6	1.1e-113	407.1
Bpe14g00417	.	10	400	Sucrose Transporter Gene Family	AT1G66570	61.6	3.1e-142	501.9
Bpe02g01667	.	15	405	Sucrose Transporter Gene Family	AT1G66570	63.1	5.3e-142	501.1
Bpe14g00418	.	10	405	Sucrose Transporter Gene Family	AT1G66570	61.1	3.4e-141	498.4
Bpe14g00420	.	15	405	Sucrose Transporter Gene Family	AT1G66570	60.8	4.6e-138	488.0
Bpe02g00155	.	24	420	Sucrose Transporter Gene Family	AT1G66570	53.0	2.3e-121	432.6
Bpe14g00427	.	1	283	Sucrose Transporter Gene Family	AT1G66570	55.4	2.2e-87	319.7
Bpe14g00417	.	9	477	Sucrose Transporter Gene Family	AT2G14670	62.6	3.1e-172	601.7
Bpe02g01667	.	15	477	Sucrose Transporter Gene Family	AT2G14670	64.1	5.3e-172	600.9
Bpe14g00418	.	9	477	Sucrose Transporter Gene Family	AT2G14670	62.2	2.9e-170	595.1
Bpe14g00420	.	8	477	Sucrose Transporter Gene Family	AT2G14670	60.6	1.9e-166	582.4
Bpe02g00155	.	24	492	Sucrose Transporter Gene Family	AT2G14670	54.4	1.7e-146	516.2
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT2G14670	56.9	7.8e-115	411.0
Bpe02g01667	.	6	477	Sucrose Transporter Gene Family	AT5G06170	62.7	1.2e-163	573.2
Bpe14g00418	.	8	477	Sucrose Transporter Gene Family	AT5G06170	60.5	2.1e-160	562.4
Bpe14g00417	.	6	477	Sucrose Transporter Gene Family	AT5G06170	61.0	2.7e-160	562.0
Bpe14g00420	.	5	477	Sucrose Transporter Gene Family	AT5G06170	58.7	1.8e-156	549.3
Bpe02g00155	.	27	492	Sucrose Transporter Gene Family	AT5G06170	51.3	2.0e-134	476.1
Bpe14g00427	.	1	355	Sucrose Transporter Gene Family	AT5G06170	53.8	3.6e-104	375.6

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0010988	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	0	1	1	1	1	1	30

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bpe02g00155	Bpe_Chr02	FPKM	460.172119	499.902374	25.538338	25.430517	4.64276	4.230217	3.651683	0.484925	0.789237	0.382339