Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00170 ATGAGTTCGGAAGAAAATGAGAGCGGCTCGTACTCATTCTTATCGCCATCTTCAACAGGTCAATCCCTTCAGAGCTCGCACCCTAAGAAGGCTAAGCGAATACGAGACTCGAGCAAGCACCCAATCTACCGAGGTGTTCGAATGAGAAATTGGGGCAAATGGGTTTCTGAAATTCGGGAACCCCGAAAGAAATCTCGCATTTGGCTCGGAACCTTCCCTACCCCTGAAATGGCTGCGAGAGCACACGACGTGGCTGCTTTAAGCATCAAAGGTAGCTCTGCTATTCTCAACTTCCCTGAACTCGCCGATTCCCTTCCTCGTCCGGTCTCCATCGCTCGCAGGGACGTTCAAGCGGCTGCGGCTAAGGCTGCTCAGATGGAGAAATTTGACTCTCTCCCGTCAATGTCAGTTTCTATGACGATGTCTTCATCGGCTTCTTCGCTGTCGTCACTGGTTTCTGCTATGGATTTGTCGTCTCCAGCAACGAATGAGTCAGGAGACTTGAGCGAGATCCTGGAATTGCCGAGTCTGGGGAAGGAGTATGAGTCGCACGAGTTGTGCAGTGAGTTTGCGTTTTTCGACTCCAATGATGGGTGGGCTTATCCACCGCCATGGTTGCAGAGTATAGATGAGTATGAATATGACAACAAACTGAAGGATGAGATAGGAGTCGGAGACTGTAATGAGTACGTTCTCTGGGATTACTGA 708 50.0 MSSEENESGSYSFLSPSSTGQSLQSSHPKKAKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEKFDSLPSMSVSMTMSSSASSLSSLVSAMDLSSPATNESGDLSEILELPSLGKEYESHELCSEFAFFDSNDGWAYPPPWLQSIDEYEYDNKLKDEIGVGDCNEYVLWDY 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1171933 1172640 - Bpe008021.1 Bpe02g00170 98319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00170 235 MobiDBLite consensus disorder prediction 1 41 - -
Bpe02g00170 235 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Bpe02g00170 235 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Bpe02g00170 235 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Bpe02g00170 235 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 216 - -
Bpe02g00170 235 MobiDBLite consensus disorder prediction 1 27 - -
Bpe02g00170 235 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Bpe02g00170 235 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 11 216 - -
Bpe02g00170 235 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Bpe02g00170 235 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Bpe02g00170 235 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Bpe02g00170 235 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00170 Bpe-Chr2:1171933 Bpe08g00494 Bpe-Chr8:3241344 1.42E-60 dispersed
Bpe14g00516 Bpe-Chr14:4538438 Bpe02g00170 Bpe-Chr2:1171933 1.50E-78 wgd
Bpe02g00170 Bpe-Chr2:1171933 Bpe02g01182 Bpe-Chr2:15488200 1.49E-76 wgd
Bpe02g00170 Bpe-Chr2:1171933 Bpe04g00398 Bpe-Chr4:2498008 3.67E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20845 PF00847 AP2 6.90E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00170 K09286 - tcc:18587975 254.603