Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00184 ATGAATCATAAAGAGAGCCTATCTGGGGTTGACACGTGGAAAAATACTCCGTTTTCGGTAAATCCATCCTCAAATGAGATTCCCCCGGATCATCCATCTTTTTCCAATATCAGCTCGCTAAATCAGCAGAAATGGGAAGACTCCGATATTTTTGATTATCATGTTGGCATGGAGTCACAGTTCCAAGAATTCAATCAAGCTTCAGAATCTCAATCTTCACTCTCCTGCAAACCGAACGATGAAGCAAAAATCTTGGAGAAAGTGGACGATCAAATGATGGAATTGGAGACACTCGAAACTTATAAAACACAAGATTGGGATCCAAGAGCAATGCTGAATAATCTTTCTTTCTTAGAACAAAAAATTCATCACCTCCAAGATTTAGTGCATGTAATTGTTGGTCAGAGAAGACAGGTTATAGGACAGTCGAACGAGCTTATGTTTCAGCAGCAGCAGCTCATAACAGCCGATCTTACTTCAATTATAATTCAGCTGGTCTCTACGGCAGGCAGCCTTCTCCCGTCGGCTAGGAACCTGTCCTCCATTAATACGTCAATTGAGCAGCTTGGTTCACTCGATGATGTTTTTATCCCGGCTGATGGTTGTAAATTTCCTGAGCTGAGCCACCAGATCGACCAAATGGGTAATGACAGCAATGAGCCAAAATTCAGTATGGAAGAACACGATTTGAAAGACGAGGAAGATGCCGATGAAGGGGAGAATCTCCCGATTGGTTCGTATGAAATTTTGCAACTTGAGAAAGAGGAAATCCTCGCACCTCACACTCATTTTTGCACGATATGCGGGAAGGGATTCAAAAGGGATGCAAATTTACGCATGCACATGAGGGGCCATGGAGACGAGTATAAAACTCCGGCTGCTCTGGCTAAACCCATCAAAGAACCAAGCTCTGAATCTGTGCTAATCAAGAGGTATTCTTGCCCATATAGTGGGTGTAAGAGAAATAGAGATCATAAAAAGTTTCAGCCTTTGAAGACTATTTTATGTGTCAAAAACCACTACAAGAGAACTCACTGTGACAAGAGCTACACCTGCAGCAAATGCAACACCAAGAAATTTTCAGTCATTGCCGATCTTAAAACGCACGAGAAGCATTGTGGGAAGGATAAGTGGTTGTGTTCTTGCGGGACGACTTTCTCAAGGAAAGACAAGCTTTTTGGGCATATCGCTCTCTTCCAAGGCCATACTCCTGCTATCATGATTGAAGAGTCGAAAGGAATGGTGGTGTCCACTGATCGAGTCGATAATATTGTATCAACAAACAGAGTCAGGAGTGCAAATTTCAATTTCGGGTCAATGTCTTCTGTGGGAAACGATGTCGAAAACATGATTGATGTGAAAGGTGTTGATGATCCGACTACCTATTACTCACTTCTGAATTTCGATCCATGTAGTATTCCCGTGTTTCATGAATTACCTCGACCCTCGTTTAATGACTAG 1461 42.37 MNHKESLSGVDTWKNTPFSVNPSSNEIPPDHPSFSNISSLNQQKWEDSDIFDYHVGMESQFQEFNQASESQSSLSCKPNDEAKILEKVDDQMMELETLETYKTQDWDPRAMLNNLSFLEQKIHHLQDLVHVIVGQRRQVIGQSNELMFQQQQLITADLTSIIIQLVSTAGSLLPSARNLSSINTSIEQLGSLDDVFIPADGCKFPELSHQIDQMGNDSNEPKFSMEEHDLKDEEDADEGENLPIGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPIKEPSSESVLIKRYSCPYSGCKRNRDHKKFQPLKTILCVKNHYKRTHCDKSYTCSKCNTKKFSVIADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIMIEESKGMVVSTDRVDNIVSTNRVRSANFNFGSMSSVGNDVENMIDVKGVDDPTTYYSLLNFDPCSIPVFHELPRPSFND 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1277753 1279213 + Bpe008035.1 Bpe02g00184 98333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00184 486 SUPERFAMILY beta-beta-alpha zinc fingers 261 288 IPR036236 -
Bpe02g00184 486 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 44 485 - -
Bpe02g00184 486 ProSitePatterns Zinc finger C2H2 type domain signature. 265 285 IPR013087 -
Bpe02g00184 486 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 44 485 IPR044300 GO:0010044|GO:0010447
Bpe02g00184 486 MobiDBLite consensus disorder prediction 1 37 - -
Bpe02g00184 486 MobiDBLite consensus disorder prediction 215 238 - -
Bpe02g00184 486 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 290 IPR013087 -
Bpe02g00184 486 SMART c2h2final6 312 345 IPR013087 -
Bpe02g00184 486 SMART c2h2final6 263 285 IPR013087 -
Bpe02g00184 486 SMART c2h2final6 350 372 IPR013087 -
Bpe02g00184 486 Gene3D Classic Zinc Finger 261 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00184 Bpe-Chr2:1277753 Bpe06g00083 Bpe-Chr6:1141493 4.49E-73 dispersed
Bpe02g00184 Bpe-Chr2:1277753 Bpe08g01298 Bpe-Chr8:14312392 3.32E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20847 None None None None Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00184 - - vvi:100248677 645.58