Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00197 ATGGCGGCGGCGGCTCCAGCTCCGGTTATTCAGACTCAGGCAGCAGCCGCTCATCCAGTGGGAGGATTCGCTACCGCTTCGTTGTATGTCGGGGATCTTGACCCTAATGTGAATGAGGGGCAGTTGTTAGATCTGTTTAGCCAAATTGCTCAAGTTGTTAGTGTTAGGGTTTGTAGGGATCAGACTCGAAGGCAATCCCTTGGCTATGCCTATGTCAATTTCACTAATCCTCAGGATGCCATCAATGCCATGGAGGCTTTGAATTTTACTCCACTTAATGGGAAGCCCATAAGGATTATGTATTCTCACCGTGATCCTAGTATTCGGAAAAGTGGATTTGCAAATGTTTTTATCAAGAATCTAGATACCTCAATAGATAACAAGGCATTGCACGATACTTTTGCTCAATTTGGATCCGTTCTCTCTTGCAAGGTTGCTGTTGATGGAAATGGTCAATCAAGAGGTCATGGATTCGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCTATTAGAAAATTGAATGGCATGCTGATTAATGATAAACAAGTTTATGTTGGGATTTTTATTCGGCGCCTCGAAAGGAATCAAGTTAAGGGATCTCCAAAGTTTACTAATCTTTATGTCAAGAATTTACCTGAAACAACTACTGACGATGACCTAAAGAAATTTTTTGACTCTTTTGGTACTATCACAAGTGCTGTTGTTATGAAGGACGCAACTGGTAAATCGAGAGGTTTTGGTTTTGTTAACTTTCAGAACTCGGATGCAGCAGCTTATGCAGTTGAGAAGTTGAATGGAACTACTATTGGTGAGGACAGAGTTTTATATGTTGGCAGGGCTCAAAGGAAATCGGAGAGAGAGGCAGAGTTGAAAGCCAAATTTCAGCAAGAAAGAATTAGTAAATATGAAAAACTTCAAGGTGCTAATCTATACCTTAAAAATCTTGACGATGGTATCAGCGAAGAGAAACTGAAAGATTTATTCTATGAGTTTGGAACAATAACATCGTGCAAGGTCATGATTGGTCAGCATGGGTTGAGCAAGGGTTCTGGTTTTGTGGCCTTTTCTTCGCCAGATGAAGCAACAAGAGCTTTGAACGAAATGAATGGAAAGATGATTGGACGGAAGCCTCTATATGTTGCTGTGGCTCAGCGAAAGGAAGAAAGAAAGGCTAGACTTCAGGCACACTTTGCACAAATTCGAGCACCTAGTGGCATTGCCCCTCTTCCGTCAGGAATTCCTGGATTTCATCCGGGTGCTAGACTTGCCCCTCAACCACTGTATTTTGGTCAAGGAACTCCTGGTATGATGCCCCCTCAGCCCACAGGTTTTGGATTCCAGCAACAACTCCTACCAGGGATGCGACCTGGTGTCTCCCCAAACTTTTTAGTTCCATATCAGCTCCAGAGGCAGAACCAACCCGGACAGCGAATTGGTGTTCGACGAGGGGGAAACCCCCACCCTCAGCAATTGCAGCAGCAACAGTTAATGCAGCGTAACTCTGGTCAAGGCTTTCGATACTTGAGCACTCCACGAAATGGTTTGGACCCATCTATCATGCCTCAAGGTCTCGTCGCCCCGATGATGCCTTTGGCATTTGATGGTTCAGGAATGCCGTTTTCTCCAACTGATATCCAACGCACCAGGCCTCCAATGTCGACTCTTGCTTCTGCTTTAGCTTCTGCAAGCCCAGAGAGTCAGCGTGTGATGCTGGGTGAGCAGTTGTATCCGCTTGTGGAGCAGCTTGAGCCAGGAAATGCTGCGAAGGTGACAGGAATGCTGCTAGAGATGGACCAACCGGAGGTACTTCATCTCATCGAGTCTCCTGATGAATTGAAGGGTAAAGTGGCCGAGGCCATGGAAGTCCTTCGCAAAGCTGCAGTGGAGTCTGATGTTTCAGATCAACTTGGTTCAATGGCACTCAATGAATGA 1935 45.32 MAAAAPAPVIQTQAAAAHPVGGFATASLYVGDLDPNVNEGQLLDLFSQIAQVVSVRVCRDQTRRQSLGYAYVNFTNPQDAINAMEALNFTPLNGKPIRIMYSHRDPSIRKSGFANVFIKNLDTSIDNKALHDTFAQFGSVLSCKVAVDGNGQSRGHGFVQFESEESAQNAIRKLNGMLINDKQVYVGIFIRRLERNQVKGSPKFTNLYVKNLPETTTDDDLKKFFDSFGTITSAVVMKDATGKSRGFGFVNFQNSDAAAYAVEKLNGTTIGEDRVLYVGRAQRKSEREAELKAKFQQERISKYEKLQGANLYLKNLDDGISEEKLKDLFYEFGTITSCKVMIGQHGLSKGSGFVAFSSPDEATRALNEMNGKMIGRKPLYVAVAQRKEERKARLQAHFAQIRAPSGIAPLPSGIPGFHPGARLAPQPLYFGQGTPGMMPPQPTGFGFQQQLLPGMRPGVSPNFLVPYQLQRQNQPGQRIGVRRGGNPHPQQLQQQQLMQRNSGQGFRYLSTPRNGLDPSIMPQGLVAPMMPLAFDGSGMPFSPTDIQRTRPPMSTLASALASASPESQRVMLGEQLYPLVEQLEPGNAAKVTGMLLEMDQPEVLHLIESPDELKGKVAEAMEVLRKAAVESDVSDQLGSMALNE 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1375476 1378901 + Bpe008047.1 Bpe02g00197 98346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00197 644 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Bpe02g00197 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Bpe02g00197 644 Gene3D - 13 114 IPR012677 -
Bpe02g00197 644 SUPERFAMILY RNA-binding domain, RBD 27 191 IPR035979 GO:0003676
Bpe02g00197 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Bpe02g00197 644 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 26 625 IPR006515 GO:0003723
Bpe02g00197 644 PANTHER POLYADENYLATE-BINDING PROTEIN 22 632 - -
Bpe02g00197 644 Gene3D - 549 629 - -
Bpe02g00197 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 272 IPR000504 GO:0003723
Bpe02g00197 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Bpe02g00197 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Bpe02g00197 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Bpe02g00197 644 CDD RRM3_I_PABPs 204 284 - -
Bpe02g00197 644 SUPERFAMILY RNA-binding domain, RBD 204 390 IPR035979 GO:0003676
Bpe02g00197 644 CDD RRM4_I_PABPs 308 386 - -
Bpe02g00197 644 CDD RRM1_I_PABPs 27 106 - -
Bpe02g00197 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Bpe02g00197 644 SMART poly_2 564 627 IPR002004 GO:0003723
Bpe02g00197 644 Gene3D - 115 188 IPR012677 -
Bpe02g00197 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Bpe02g00197 644 Coils Coil 286 306 - -
Bpe02g00197 644 SMART rrm1_1 115 187 IPR000504 GO:0003723
Bpe02g00197 644 SMART rrm1_1 310 382 IPR000504 GO:0003723
Bpe02g00197 644 SMART rrm1_1 206 279 IPR000504 GO:0003723
Bpe02g00197 644 SMART rrm1_1 27 100 IPR000504 GO:0003723
Bpe02g00197 644 CDD RRM2_I_PABPs 112 187 IPR045305 -
Bpe02g00197 644 PANTHER RNA BINDING PROTEIN 22 632 - -
Bpe02g00197 644 SUPERFAMILY PABC (PABP) domain 493 629 IPR036053 GO:0003723
Bpe02g00197 644 SMART rrm2_1 310 382 IPR003954 GO:0003676
Bpe02g00197 644 SMART rrm2_1 27 100 IPR003954 GO:0003676
Bpe02g00197 644 SMART rrm2_1 115 187 IPR003954 GO:0003676
Bpe02g00197 644 SMART rrm2_1 206 278 IPR003954 GO:0003676
Bpe02g00197 644 Gene3D - 293 398 IPR012677 -
Bpe02g00197 644 Gene3D - 190 292 IPR012677 -
Bpe02g00197 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00197 Bpe-Chr2:1375476 Bpe02g01797 Bpe-Chr2:20227109 0 dispersed
Bpe02g00197 Bpe-Chr2:1375476 Bpe12g00052 Bpe-Chr12:406231 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00197 K13126 - zju:107421570 928.317