Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00205 ATGGATTCCGTCGGGCTAGCTGTTGTCGCAGCCGTCGCCAGCTTCTTCGTCTTACTTCTGATCTTAGCCCTCTTCTTTAGTCTCTGCAAGAAACCCTCCTCTTTCTCCCCCTACCACCACCAGATCCAAAATCGAGCAGCTAGAAGTAGAGATCTAACCTCGATCGTCGTCGACGAGAGCGCTTCCTTTGATCCTTCCCTCCAAATTTCCATGCTCGACCTAAAAACAGCCACCAAGAATTTCTCCTCCGATCTCATAGTCGGCGACGGTTCCTTCGGCCTCGTCTACAAAGCCAAGCTCCCCTCCGGCACCGCCGTCGCAATCAAGAAGCTCGATCCGGACGCTTTTCAAGGATTTCGGGAGTTCCGCGCCGAAATGGAAACGCTAGCGAAGCTGCGCCACAGAAATCTCGTCAAGATGTTAGGGTACTGCAAATCAGGTGCCGACAGGTTGTTGATTTACGAGTTCATGGAGAGAGGAAGTCTCGACATGTGCCTATACGACACGTCGTCCTCAGACCAATCGGACAAGTCGACAGTGCGATTGCCGTTGTCATGGGCCACAAGGGTTAAGATAGTAAAAGGAGTGGCTAATGGGCTTGCTTTTCTCCATGGGCTAGAAAAGCCCATTATCCACCGAGACATAAAGGCCAGCAACGTACTACTGGACTCAAACTTTGAGGCCCATATTTCAGATTTCGGCCTAGCCCGGCTGATCGACACTTCAAATTCACACGTATCAACGCAGGTAGCCGGAACGATGGGATACATGCCGCCGGAGTACAAGGACGGGCACACGGGGGCGTCACCGAAAGCTGACGTGTACAGTTTCGGGGTCTTGATGTTGGAAATCGCAACGTGCCGGAGGCCCAATTTGCCGGCGAAGATAGACGGGAAAGAATTGGTGCTGGCGGAGTGGGCGAGGAGATTGGTGGCCCAAAAGAGGGAGATGGAAATGGTGGATTCGAGTATATCAAGAGAGGGCCTGAAAGAGGAAAGCGTGGAAGAGTACTTCAAGATTGCTGGCATGTGTACGACGGAGAAATATAAAGCAAGGCCCCCAATGCGTGAGGTAGTTGAATTATTAGAGAGAATTTAG 1098 51.73 MDSVGLAVVAAVASFFVLLLILALFFSLCKKPSSFSPYHHQIQNRAARSRDLTSIVVDESASFDPSLQISMLDLKTATKNFSSDLIVGDGSFGLVYKAKLPSGTAVAIKKLDPDAFQGFREFRAEMETLAKLRHRNLVKMLGYCKSGADRLLIYEFMERGSLDMCLYDTSSSDQSDKSTVRLPLSWATRVKIVKGVANGLAFLHGLEKPIIHRDIKASNVLLDSNFEAHISDFGLARLIDTSNSHVSTQVAGTMGYMPPEYKDGHTGASPKADVYSFGVLMLEIATCRRPNLPAKIDGKELVLAEWARRLVAQKREMEMVDSSISREGLKEESVEEYFKIAGMCTTEKYKARPPMREVVELLERI 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1435335 1436432 - Bpe008055.1 Bpe02g00205 98354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00205 365 Pfam Protein tyrosine and serine/threonine kinase 86 362 IPR001245 GO:0004672|GO:0006468
Bpe02g00205 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Bpe02g00205 365 Gene3D Phosphorylase Kinase; domain 1 41 156 - -
Bpe02g00205 365 CDD STKc_IRAK 87 365 - -
Bpe02g00205 365 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Bpe02g00205 365 SUPERFAMILY Protein kinase-like (PK-like) 63 362 IPR011009 -
Bpe02g00205 365 Gene3D Transferase(Phosphotransferase) domain 1 157 365 - -
Bpe02g00205 365 SMART serkin_6 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00205 365 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 1 364 - -
Bpe02g00205 365 PANTHER OS01G0253100 PROTEIN 1 364 IPR045271 GO:0004714|GO:0006468
Bpe02g00205 365 ProSiteProfiles Protein kinase domain profile. 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00205 - - - csv:101222159 454.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00205 Bpe-Chr2:1435335 Bpe03g00294 Bpe-Chr3:3991704 7.42E-76 dispersed
Bpe02g00205 Bpe-Chr2:1435335 Bpe11g01618 Bpe-Chr11:12318423 1.92E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1346 . . . . Bpe02g00205 . . Bma01g02515 . Cmo15g00590 . . . . . . Cpe13g00693 Bhi04g01757 . . . . . Lcy10g1364 . . . . . . . . . . . . . . Cme03g00296 . . . . . . . . . . . . . Car04g02364 Car15g00542 Cpe01g02126 . . . . . . . . . . . . . . . Lsi08g00568 . Chy03g00493 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010752 0 1 0 1 1 0 2 0 0 1 1 1 2 1 0 1 0 0 2 0 1 1 1 0 1 1 1 1 0 1 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63151 PF07714 PK_Tyr_Ser-Thr 2.60E-44 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00205 Bpe_Chr02 FPKM 30.819586 27.046532 28.088306 29.152641 35.030373 41.821472 38.139671 45.785053 42.603676 46.820847