Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00213 ATGTCATTCCGCAGTATAGTACGTGATGTTAGAGACGGATTTGGAAGCTTTTCAAGGCGTAGTTTTGAGGTGAGGATCCCCAGCCACTACAGGGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTCTTGTAATCCAAACTAGTCGATGGGCTAGTCTCCCACCCGAGCTATTGAGGGATGTGATAAAAAGATTGGAGGCTAGTGAGAGTACATGGCCTTCACGAAAGCATGTTGTCGCTTGTGCTTCTGTATGCAGATCATGGAGAGATATGTGCAAAGAAATCGTCCAAAGTCCAGAGTTTTCCGGCAAGATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAATTATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACCTACCGGCTTTTTCTTTGCCTCAGTCCTGCTTTACTTGTCGAGAATGGAAAATTCCTTCTCTCGGCAAAACGAACAAGGAGGACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGACAATATATCGAGATCGAGCTGCACATACATTGGAAAACTGAGGTCAAATTTTTTGGGGACGAAATTCTTAATATTCGATACCCAACCTCCTTACAATAACATGCAACTCTCCCCACCCGGTCGTAGCCGAAGATTTTACTCGAAAAAAGTTTCTCCAAAAGTGCCTACTTGCAGTTACAACATTGCCGAGGTTACATATGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCACCATGCATTCGATCCCCATCTCAGCCATCGAGCCGGGAGGCTCCATCCCTGGCCAGCCGGAGCTCCTGGCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCTAAAGTCGACAACTGCTCCGAGTTTAGCAGTTCTCGGTTCTCGGACATTGTTAGGTCAAATGAAGAACAAGAAGATGGTACAAAAGAGGAGATTTGGCCATTGATTCTTAAGAACAAAGCGCCCCGTTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTCACTGTTGCCTCTGTCAAGAACTTTCAGCTGATAGCAGCCGCAGAATCATCTCTGGGGCCCCCTGCCCAGCCGCCCCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTCACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAATTGGCCTGTGAA 1272 47.72 MSFRSIVRDVRDGFGSFSRRSFEVRIPSHYRGKSHGAVHELHDHPLVIQTSRWASLPPELLRDVIKRLEASESTWPSRKHVVACASVCRSWRDMCKEIVQSPEFSGKITFPVSLKQPGSRDGIIQCFIKRDKANLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIFDTQPPYNNMQLSPPGRSRRFYSKKVSPKVPTCSYNIAEVTYELNVLGTRGPRRMHCTMHSIPISAIEPGGSIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQEDGTKEEIWPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAESSLGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1479145 1482527 - Bpe025063 Bpe02g00213 98362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00213 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bpe02g00213 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 424 - -
Bpe02g00213 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
Bpe02g00213 424 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bpe02g00213 424 Gene3D - 48 101 - -
Bpe02g00213 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Bpe02g00213 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Bpe02g00213 424 PANTHER TUBBY-RELATED 1 424 - -
Bpe02g00213 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
Bpe02g00213 424 Pfam Tub family 114 419 IPR000007 -
Bpe02g00213 424 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00213 Bpe04g00353 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00213 Bpe-Chr2:1479145 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe02g00213 Bpe-Chr2:1479145 Bpe04g00353 Bpe-Chr4:2239597 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20851 PF01167 Tub 6.60E-115 CL0395 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00213 K19600 - qsu:111992792 751.125