Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00213 ATGTCATTCCGCAGTATAGTACGTGATGTTAGAGACGGATTTGGAAGCTTTTCAAGGCGTAGTTTTGAGGTGAGGATCCCCAGCCACTACAGGGGGAAATCCCATGGGGCTGTCCATGAGTTGCACGATCACCCTCTTGTAATCCAAACTAGTCGATGGGCTAGTCTCCCACCCGAGCTATTGAGGGATGTGATAAAAAGATTGGAGGCTAGTGAGAGTACATGGCCTTCACGAAAGCATGTTGTCGCTTGTGCTTCTGTATGCAGATCATGGAGAGATATGTGCAAAGAAATCGTCCAAAGTCCAGAGTTTTCCGGCAAGATCACATTTCCTGTCTCCTTGAAGCAGCCAGGGTCTCGAGATGGAATTATTCAGTGCTTCATTAAGAGGGATAAAGCTAATTTAACCTACCGGCTTTTTCTTTGCCTCAGTCCTGCTTTACTTGTCGAGAATGGAAAATTCCTTCTCTCGGCAAAACGAACAAGGAGGACTACTTGCACAGAGTATGTGATCTCCATGGATGCTGACAATATATCGAGATCGAGCTGCACATACATTGGAAAACTGAGGTCAAATTTTTTGGGGACGAAATTCTTAATATTCGATACCCAACCTCCTTACAATAACATGCAACTCTCCCCACCCGGTCGTAGCCGAAGATTTTACTCGAAAAAAGTTTCTCCAAAAGTGCCTACTTGCAGTTACAACATTGCCGAGGTTACATATGAGCTGAATGTTTTAGGCACGCGCGGCCCACGCAGGATGCACTGCACCATGCATTCGATCCCCATCTCAGCCATCGAGCCGGGAGGCTCCATCCCTGGCCAGCCGGAGCTCCTGGCCCGGTCCCTCGAGGACTCCTTCCGAAGCATTTCCTTCTCTAAAGTCGACAACTGCTCCGAGTTTAGCAGTTCTCGGTTCTCGGACATTGTTAGGTCAAATGAAGAACAAGAAGATGGTACAAAAGAGGAGATTTGGCCATTGATTCTTAAGAACAAAGCGCCCCGTTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTCACTGTTGCCTCTGTCAAGAACTTTCAGCTGATAGCAGCCGCAGAATCATCTCTGGGGCCCCCTGCCCAGCCGCCCCAGTCAGACCATGACAAGATCATTCTTCAGTTTGGCAAGGTTGGAAAAGATATGTTCACCATGGATTATAGATATCCTTTATCTGCATTTCAAGCTTTTGCCATCTGTTTGAGCAGCTTCGACACGAAATTGGCCTGTGAA 1272 47.72 MSFRSIVRDVRDGFGSFSRRSFEVRIPSHYRGKSHGAVHELHDHPLVIQTSRWASLPPELLRDVIKRLEASESTWPSRKHVVACASVCRSWRDMCKEIVQSPEFSGKITFPVSLKQPGSRDGIIQCFIKRDKANLTYRLFLCLSPALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKLRSNFLGTKFLIFDTQPPYNNMQLSPPGRSRRFYSKKVSPKVPTCSYNIAEVTYELNVLGTRGPRRMHCTMHSIPISAIEPGGSIPGQPELLARSLEDSFRSISFSKVDNCSEFSSSRFSDIVRSNEEQEDGTKEEIWPLILKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAESSLGPPAQPPQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1479145 1482527 - Bpe025063 Bpe02g00213 98362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00213 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Bpe02g00213 424 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bpe02g00213 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 424 - -
Bpe02g00213 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
Bpe02g00213 424 SUPERFAMILY F-box domain 49 97 IPR036047 GO:0005515
Bpe02g00213 424 Gene3D - 48 101 - -
Bpe02g00213 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Bpe02g00213 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Bpe02g00213 424 PANTHER TUBBY-RELATED 1 424 - -
Bpe02g00213 424 Pfam F-box domain 53 99 IPR001810 GO:0005515
Bpe02g00213 424 Pfam Tub family 114 419 IPR000007 -
Bpe02g00213 424 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00213 K19600 TUB, TULP; tubby and related proteins - qsu:111992792 751.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00213 Bpe04g00353 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00213 Bpe-Chr2:1479145 Bpe05g00406 Bpe-Chr5:18452789 0 dispersed
Bpe02g00213 Bpe-Chr2:1479145 Bpe04g00353 Bpe-Chr4:2239597 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00406 . 1 461 TUB Transcription Factor Family AT1G76900 65.4 4.3e-168 587.8
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT1G76900 69.2 6.2e-167 583.9
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT1G76900 67.5 7.6e-165 577.0
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT1G76900 65.7 3.8e-164 574.7
Bpe12g00743 . 5 376 TUB Transcription Factor Family AT1G76900 54.8 3.7e-119 425.2
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT1G76900 50.3 3.4e-117 418.7
Bpe05g00406 . 208 461 TUB Transcription Factor Family AT1G25280 72.3 3.8e-100 361.3
Bpe07g00349 . 179 432 TUB Transcription Factor Family AT1G25280 72.7 6.5e-100 360.5
Bpe04g00353 BCT 193 443 TUB Transcription Factor Family AT1G25280 64.8 1.1e-91 333.2
Bpe02g00213 BCT 173 424 TUB Transcription Factor Family AT1G25280 68.4 1.5e-91 332.8
Bpe12g00743 . 138 376 TUB Transcription Factor Family AT1G25280 67.5 1.3e-84 309.7
Bpe04g01142 . 156 387 TUB Transcription Factor Family AT1G25280 53.6 6.4e-71 264.2
Bpe04g00217 BCT 177 414 TUB Transcription Factor Family AT1G25280 54.7 2.5e-67 252.3
Bpe02g00385 BCT 160 392 TUB Transcription Factor Family AT1G25280 53.5 5.8e-64 241.1
Bpe04g01142 . 98 387 TUB Transcription Factor Family AT5G18680 62.8 1.2e-97 353.2
Bpe05g00852 . 98 403 TUB Transcription Factor Family AT5G18680 58.8 6.0e-94 340.9
Bpe02g00213 BCT 112 424 TUB Transcription Factor Family AT5G18680 50.8 1.2e-81 300.1
Bpe07g00349 . 111 432 TUB Transcription Factor Family AT5G18680 51.2 9.9e-81 297.0
Bpe04g00217 BCT 114 414 TUB Transcription Factor Family AT5G18680 51.5 6.0e-78 287.7
Bpe12g00743 . 142 376 TUB Transcription Factor Family AT5G18680 52.3 1.4e-58 223.4
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT2G18280 56.9 2.8e-123 438.7
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 5.1e-117 417.9
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT2G18280 51.3 2.8e-115 412.1
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT2G18280 50.4 4.8e-115 411.4
Bpe05g00852 . 1 403 TUB Transcription Factor Family AT2G18280 52.0 2.2e-112 402.5
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT2G18280 52.6 3.8e-112 401.7
Bpe02g00385 BCT 1 392 TUB Transcription Factor Family AT2G18280 51.4 3.3e-100 362.1
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT2G47900 68.2 7.7e-161 563.5
Bpe05g00852 . 1 403 TUB Transcription Factor Family AT2G47900 64.9 1.3e-155 546.2
Bpe04g00353 BCT 1 443 TUB Transcription Factor Family AT2G47900 54.6 2.0e-132 469.2
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT2G47900 55.2 2.9e-131 465.3
Bpe02g00213 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.0 9.2e-130 460.3
Bpe05g00406 . 1 461 TUB Transcription Factor Family AT2G47900 52.1 7.3e-127 450.7
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT2G47900 52.7 9.0e-117 417.2
Bpe10g00587 . 80 298 TUB Transcription Factor Family AT1G16070 59.6 7.0e-71 264.2
Bpe02g00213 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 8.2e-146 513.5
Bpe07g00349 . 64 432 TUB Transcription Factor Family AT1G43640 66.4 5.0e-143 504.2
Bpe05g00406 . 65 461 TUB Transcription Factor Family AT1G43640 62.8 4.4e-139 491.1
Bpe04g00353 BCT 65 443 TUB Transcription Factor Family AT1G43640 62.0 3.7e-138 488.0
Bpe04g01142 . 47 387 TUB Transcription Factor Family AT1G43640 51.6 7.8e-104 374.0
Bpe05g00852 . 47 403 TUB Transcription Factor Family AT1G43640 50.3 5.2e-100 361.3
Bpe04g00217 BCT 67 414 TUB Transcription Factor Family AT1G43640 51.2 3.2e-97 352.1
Bpe12g00743 . 71 376 TUB Transcription Factor Family AT1G43640 53.1 2.0e-96 349.4
Bpe04g00217 BCT 1 414 TUB Transcription Factor Family AT1G47270 61.3 5.9e-134 474.2
Bpe02g00213 BCT 48 424 TUB Transcription Factor Family AT1G47270 57.5 1.1e-116 416.8
Bpe02g00385 BCT 31 392 TUB Transcription Factor Family AT1G47270 57.5 1.2e-113 406.8
Bpe07g00349 . 1 432 TUB Transcription Factor Family AT1G47270 50.9 5.4e-111 397.9
Bpe05g00406 . 48 461 TUB Transcription Factor Family AT1G47270 50.7 4.7e-107 384.8
Bpe04g01142 . 1 387 TUB Transcription Factor Family AT1G47270 50.6 8.9e-106 380.6
Bpe09g00261 . 1 377 TUB Transcription Factor Family AT1G53320 68.3 7.7e-147 516.9
Bpe04g01142 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 6.2e-96 347.4
Bpe05g00852 . 98 403 TUB Transcription Factor Family AT3G06380 59.3 4.1e-92 334.7
Bpe02g00213 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 1.8e-79 292.7
Bpe04g00217 BCT 118 414 TUB Transcription Factor Family AT3G06380 53.0 7.6e-78 287.3
Bpe12g00743 . 138 376 TUB Transcription Factor Family AT3G06380 52.1 2.4e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20851 PF01167 Tub 6.60E-115 CL0395 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00213 Bpe_Chr02 FPKM 1.570751 1.509891 4.641096 4.070873 4.190434 1.87396 3.882804 10.078526 10.891071 13.235744