Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00222 ATGGAATACTCCGGCGATCAATTCGACGTTATTGTGATCGGAGCTGGAATAATGGGGAGTTCCACCGCATACCAAGTCGCCAAAAGAGCGAACAGAGTACTACTGCTGGAGCAATTCGATTTTCTACACCATCGAGGCTCCTCTCACGGCGAGTCTCGCACCATAAGAGCCACTTACCCGGAGGGCTACTACCCTGAAATGGTCGTCGAGTCCTCCAAATTATGGGAGGAGGCCGAGTCTGAGATCGGCTACAAAGTTTATTTCAAGGCAGAGCAACTCGACATCGGCCCCACCACTAATAAGAGCCTCCGCGCCGTTATCGGAAACTGCCAGAAATGTTCCATCCCCCACCGCGTTCTTAGTCCTTCTGAGCTCTCTGACAAGTACTCTGGTCGAGTAACGATACCGGAAGGCTGGGTTGGGGTCTGGAGTAAGCTTGGCGGCGTCATAAAGCCCACCAAGGCGGTGTCCATGTTCCAAACCCTCGCGTTCCAGAAGGGGGCGACGCTGAGGGACAACACGGAAGTGGAAAACATCGAGAAATCAGATAAACAAGGAGGTGGGGTGGTCGTGATTAGCACGAACGGAGAGAGGTTCTGGGGGAAAAAATGCGTGGTGACGATCGGAGCATGGATGAAGAAGCTGGTGGCAAGAGTATCCAGCGTTACGCTGCCGCTGCAACCGCTGGAAACCACGGTGTGTTACTGGAGAATCAAGGAGGGGCACGAAGAGGACTACTCAATCGGAGGGGGTTTCCCGACCTTCGCCAGCTACGGCGACCCGTACATCTACGGGACGCCTTCGTTGGAGTTTCCGGGGCTGATAAAGGTGGCGGTGCACGGCGGGTACCCGTGCGACCCAGACAAAAGGCCGTGGGGGCCGGGGGTATCGCTGGATCCAATGAAAGAATGGATCGAGGAGAAGTTCGGAGGTCGAGTGGACTCAGGTGGGCCGGTGGCGACGCAGCTGTGCATGTACTCGATGAGCCCGGACGAGGACTTCGTGATGGACTTTCTGGGCGGAGAGTACGAGAAAGAGGTGGTGATCGGGGGTGGTTTCTCCGGGCACGGGTTCAAGATGTCGCCGGTGGTGGGGAGGATATTGGCTGACCTGGCCCTGACGGGAGAAGCAGAAGGAGTGGAGCTCAGCCACTTTAGAATAGGGAGGTTTCAGGACAACCCAAAAGGGAATGTGAAGGAGTTTGAAGACCAAGTCAACTATCATTAA 1227 55.5 MEYSGDQFDVIVIGAGIMGSSTAYQVAKRANRVLLLEQFDFLHHRGSSHGESRTIRATYPEGYYPEMVVESSKLWEEAESEIGYKVYFKAEQLDIGPTTNKSLRAVIGNCQKCSIPHRVLSPSELSDKYSGRVTIPEGWVGVWSKLGGVIKPTKAVSMFQTLAFQKGATLRDNTEVENIEKSDKQGGGVVVISTNGERFWGKKCVVTIGAWMKKLVARVSSVTLPLQPLETTVCYWRIKEGHEEDYSIGGGFPTFASYGDPYIYGTPSLEFPGLIKVAVHGGYPCDPDKRPWGPGVSLDPMKEWIEEKFGGRVDSGGPVATQLCMYSMSPDEDFVMDFLGGEYEKEVVIGGGFSGHGFKMSPVVGRILADLALTGEAEGVELSHFRIGRFQDNPKGNVKEFEDQVNYH 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1538040 1539266 - Bpe008068.1 Bpe02g00222 98371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00222 408 Gene3D - 8 376 IPR036188 -
Bpe02g00222 408 Gene3D - 91 328 - -
Bpe02g00222 408 PANTHER PEROXISOMAL SARCOSINE OXIDASE 6 401 - -
Bpe02g00222 408 SUPERFAMILY FAD-linked reductases, C-terminal domain 226 330 - -
Bpe02g00222 408 SUPERFAMILY FAD/NAD(P)-binding domain 7 391 IPR036188 -
Bpe02g00222 408 TIGRFAM soxA_mon: sarcosine oxidase, monomeric form 8 396 IPR006281 GO:0008115
Bpe02g00222 408 PANTHER PEROXISOMAL SARCOSINE OXIDASE 6 401 IPR045170 GO:0016491|GO:0050660
Bpe02g00222 408 Pfam FAD dependent oxidoreductase 9 371 IPR006076 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00222 K00306 PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7] - pop:7458724 643.654
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g666 . . . . . Bpe02g00222 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1863 Cone7ag1768 . . . Csa03g04410 Chy04g00290 . . . . . . . . . Sed13g2098 . . Cma09g00532 . . . . . Bhi09g02378 Tan01g3741 Cmetu04g0136 . Hepe01g2094 Mch11g0632 . . . . . . . . . . . Cme04g00332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00222 Bpe_Chr02 FPKM 18.908169 22.403963 23.921799 25.276756 18.773159 17.563295 18.107594 43.852898 38.838478 42.862507