Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00223 AAAATGTCTCGAGTTTATGTGGGGAACTTAGATCCACGAGTTTCAGAGCGGGAACTTGAAGATGAATTTCGTGTATTTGGAGTTATTAGAAGTGTATGGGTTGCCCGGAGACCTCCTGGTTATGCATTCATTGATTTTGATGACCCCAGAGACGCTGGAGATGCAATCCACGAAATAGATGGGAAGAACGGGTGGAGAGTTGAGCTTTCTCACAACTCTAGAGGTGGTGGAGGGGGTAGAGGTGGGGGAAATGGTCGTTCTGGTAGTTCTGATCTAAAATGTTATGATTGCGGTGAACCTGGTCACTTTGCTCGTGAATGTCGTACACGCGGAGGTTCAGGAAAACGTCGCAGCCGAAGTCCTCGATATCGCAGAAGCCCAAGTTATGGTCGCAGTTTCAGTCCTCATGGGCACTCCCCCCGACGACGAAGTTTGAGTCCCCGTGGCCGTAGCCATAGCAGGTCACCACCACGAGGCCGTGAAGAATTACCCTATGCCAATGGGTGA 507 50.3 KMSRVYVGNLDPRVSERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDPRDAGDAIHEIDGKNGWRVELSHNSRGGGGGRGGGNGRSGSSDLKCYDCGEPGHFARECRTRGGSGKRRSRSPRYRRSPSYGRSFSPHGHSPRRRSLSPRGRSHSRSPPRGREELPYANG 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1545664 1547107 + Bpe008070.1 Bpe02g00223 98372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00223 168 Gene3D - 85 144 - -
Bpe02g00223 168 MobiDBLite consensus disorder prediction 98 113 - -
Bpe02g00223 168 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 167 - -
Bpe02g00223 168 SMART rrm1_1 4 70 IPR000504 GO:0003723
Bpe02g00223 168 SUPERFAMILY RNA-binding domain, RBD 3 86 IPR035979 GO:0003676
Bpe02g00223 168 CDD RRM_SRSF3_like 4 71 - -
Bpe02g00223 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 74 IPR000504 GO:0003723
Bpe02g00223 168 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 3 167 - -
Bpe02g00223 168 Pfam Zinc knuckle 93 108 IPR001878 GO:0003676|GO:0008270
Bpe02g00223 168 Gene3D - 1 74 IPR012677 -
Bpe02g00223 168 MobiDBLite consensus disorder prediction 63 168 - -
Bpe02g00223 168 SUPERFAMILY Retrovirus zinc finger-like domains 73 113 IPR036875 GO:0003676|GO:0008270
Bpe02g00223 168 ProSiteProfiles Zinc finger CCHC-type profile. 93 108 IPR001878 GO:0003676|GO:0008270
Bpe02g00223 168 SMART c2hcfinal6 93 109 IPR001878 GO:0003676|GO:0008270
Bpe02g00223 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 62 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00223 K12896 SRSF7, SFRS7; serine/arginine-rich splicing factor 7 - cit:102606969 214.927
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00223 Bpe-Chr2:1545664 Bpe10g00832 Bpe-Chr10:14329364 1.14E-54 dispersed
Bpe02g00223 Bpe-Chr2:1545664 Bpe15g01308 Bpe-Chr15:21331644 1.38E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g661 . . . . . Bpe02g00223 . . . . Cma01g01578 . . . . . . . . . . . . . . . . . . . . Cone4ag1864 Cone7ag1771 . . . Csa03g04411 Chy04g00289 . . . . . . . . . . . . Cma09g00533 . . . . . . . . . . . . . . . . . . . . . . Cme04g00330
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001098 3 1 1 2 2 1 5 2 2 2 1 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 2 7 5 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00223 Bpe_Chr02 FPKM 22.547892 25.235851 45.261166 48.141052 17.784216 15.51571 20.088444 20.433647 23.380636 22.698248