Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00225 ATGGCCCCAAGGTTGGACTTCTCCGGGTGGTTGGCGAAGGATTCACTGAAAGGATCGCCGGTGGTCGTGACTATGGAGAAACCCAATTTTTCATTCGTTGAAATCGACAGTCCGGACGCTGCATTCCGGCCGATGGAAAAGAGCCGGGGAAAAAACGCCAAACAAGTGACGTGGGTATTGCTTCTCAAAGCCCATCGAGCCGTCGGTTGCATAGCCTGGCTTGCCACCGTCCTCTGGGCATTGCTCGGAACCATTAAAAGGAGGTTGATCTACAGACAAGGTGTGGCTATCGAGAGTGGGAAATTGGAGAAGGGAAAGTTGCTGTTTAGAGTCATAAGAGGATTCTTACTAACTTCATTGGTAGTTCTGTCTTTCGAGGTTGTCGCTCATTACAAAGGTTGGAACTATTTTCGAAATGCAAATATGCACATTCTACAGGCGTCAGATTTGCAGGAATTTCTTCATTTGGTCTATTTGATTTGGTTAAACTTCAGAGCAAACTATATTGCTCCCCCAATTCAGGCACTCTCTAAATTTTGTGTTCTTCTGTTCCTCATCCAATCTCTGGATCGCATGATTCTTAGCTTGGGCTGCTTCTGGATAAAGTACAAGAAGATTAGGCCAAGAACAGAAGATGATCCTTTCAAGTCGAATGATATTGAGGAAGGAGGATTTGACTACCCAATGGTTCTTGTTCAAATACCAATGTGTAACGAGAAAGAGGTTTATGAGCAATCTATCTCTGCAGTCTGTCAGATGGATTGGCCGAGGGACCGTTTGTTGATTCAAGTTCTTGATGATTCCGACGACGAGAGTATCCAATGGCTGATTAACGCAGAGGTTACTAAGTGGAACCAAAAGGGTATCAATATAATCTATCGGCATCGATTGGTAAGAACTGGTTACAAAGCTGGAAATCTCAAGTCTGCAATGACCTGTGATTATGTCAAAGGCTATGAGTTTGTTGCTATCTTTGATGCTGATTTCCAACCCAATCCTGATTTTCTCAAACTGACAGTACCCCATTTCAAGGACAACCCGGAACTTGGTTTGGTTCAAGCTCGATGGGCGTTCGTCAACAAGGACGAGAACCTGTTGACTCGTCTTCAAAACATCAACCTGTGTTTCCACTTTGAGGTCGAACAGCAAGTTAATGGAGTGTTTCTTAGTTTCTTCGGTTTCAACGGCACTGCCGGAGTTTGGAGAATCAAAGCTCTCGAAGAATCTGGAGGGTGGCTCGAGAGGACCACTGTAGAGGATATGGACATAGCTGTTAGAGCTCATCTCAATGGCTGGAAATTCATCTTTCTTAATGATGTCAAGGTAACTTGCGAAGTGCCTGAATCGTACGAAGCTTACCGGAAGCAGCAGCATCGGTGGCACTCTGGTCCGATGCAGCTATTTCGACTGTGTCTTCCGGCGATCATAACCTCCAAGATATCAGCATGGAAAAAAGCTAATATGATTCTACTGTTCTTTCTACTGAGGAAGCTAATCCTTCCATTCTATTCCTTCACATTGTTCTGCATAATTCTTCCACTAACGATGTTCGTCCCAGAGGCCGAGCTTCCCGTGTGCGTGATCTGTTATGTGCCGGTATTTATGTCTTTTCTCAACATCCTTCCGGCGCCAAAATCGTTTCCTTTCATCGTCCCTTATCTCCTATTCGAAAACACGATGTCAGTCACCAAATTCAACGCCATGGTTTCCGGATTGTTCCAACTGGGCAGCTCTTACGAGTGGGTGGTCACCAAAAAAGCCGGCCGCTCATCGGAATCGGACCTGATTGCAGCCGCCGAACGGGAGTTGAAGCTGATGATTCAGCCGCAGATTTCTAGAGGCGCCTCTGATAGCGAGCTGTCCGAGCTAAACATATTCAAGGAAAAGAAAGAAGCAACTTCTGCTCCGACTAAGAAAACTAACAAGATATACAAGAAAGAGCTGGCTTTGGCCTTTCTTCTGCTCACAGCTTCAGTGAGAAGCCTCTTATCTGCTCAAGGAGTACACTTCTACTTCCTGCTCTTTCAAGGAGTGACCTTTCTCCTTGTGGGTCTTGATCTTATTGGGGAGCAACTGAGC 2079 45.6 MAPRLDFSGWLAKDSLKGSPVVVTMEKPNFSFVEIDSPDAAFRPMEKSRGKNAKQVTWVLLLKAHRAVGCIAWLATVLWALLGTIKRRLIYRQGVAIESGKLEKGKLLFRVIRGFLLTSLVVLSFEVVAHYKGWNYFRNANMHILQASDLQEFLHLVYLIWLNFRANYIAPPIQALSKFCVLLFLIQSLDRMILSLGCFWIKYKKIRPRTEDDPFKSNDIEEGGFDYPMVLVQIPMCNEKEVYEQSISAVCQMDWPRDRLLIQVLDDSDDESIQWLINAEVTKWNQKGINIIYRHRLVRTGYKAGNLKSAMTCDYVKGYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLSFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVTCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAIITSKISAWKKANMILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVCVICYVPVFMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRSSESDLIAAAERELKLMIQPQISRGASDSELSELNIFKEKKEATSAPTKKTNKIYKKELALAFLLLTASVRSLLSAQGVHFYFLLFQGVTFLLVGLDLIGEQLS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1554122 1556530 - Bpe025066 Bpe02g00225 98374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00225 693 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 1 693 - -
Bpe02g00225 693 Pfam Glycosyl transferase family group 2 322 518 IPR001173 -
Bpe02g00225 693 PANTHER - 1 693 - -
Bpe02g00225 693 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 507 IPR029044 -
Bpe02g00225 693 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 222 447 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00225 - - - qsu:111987347 1218.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00225 Bpe04g00141 CCT
Bpe02g00225 Bpe04g00141 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00225 Bpe-Chr2:1554122 Bpe04g00141 Bpe-Chr4:951974 0 dispersed
Bpe02g00225 Bpe-Chr2:1554122 Bpe04g00343 Bpe-Chr4:2185438 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00225 Bpe_Chr02 FPKM 13.025162 13.535712 15.217041 15.026525 10.424801 10.228517 11.358244 18.224363 17.742495 17.842941