Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00226 TTGGTGTTACAGTTGCAGTGCAGGTCACTTCATAATTTCCCAGGAAGTTTTGTACCAAGTGTACCATTTAACCCTGCTAGTAGTTGGACTGAAACATCTTATGTGAGTTTTAGAAAAGGGGGAGTTGCTTTTGTGATCAAGAAAGGCCGTCTAGAAGTTGGACGATGTTACCGTGGTCTCACGGGTCTTGGTGATGGCCCTAAGCCTTTTTCGGTCATTCCATCCCGCTTAGAATATAATTTTCTTGATTCTGGGGCGTCTTTAAAAGTTACCAGTCAAGGATCTTTGAACAATAAAATTGATTTTAGCTTTCTGAATTATGGATTTTTTGCAAAAAGGTTTCTCTCCCATGATACTGGGGTTGGAAACAAAATTAGCTCCAAGAAGTTATATGATGCAAGAAGTGGATCAAGTAACATACCATATAAAGGATTTAAAAAAAATTGGAAGAAGGCAAAGGCAGTTACTGCTTTCAGTCATAATGGCTCTTCTTCGTCCAACACCATGGCCTCCTCCAAAGTTGAAGCAAGGATGTCAGGTAAACTTCTAGGTGGACCAGTGGAAGAGAATTCTGAAATGGTATTATCTAGCTCTATCATAGGTTCTAAAGTCAATAAGAAAAAAAAGCCAAGGACAAAAGAAAGCAAGGAAGAAAAATGTTCCATGGACGTAGCAGCTGAAGTTGATGCTTTAAAAAGTTCCAGGGATATTGAAGATGGAAACTCCATTATAAGGAACCATGGTCATAATAAAGAATCCACCACAAAGGTAACTATGGAAAAGGTTACTGGCCATGCATCAACAAAACCTCAATCAAATAAGAAAAGAGCAAACTCTGGCTCTAAAGGAAAATCTGTAGAAGCTGCTAATGTGACATCACAGAAACAAGCACAAGGAGCAAAGGGAAGGTTGAAACCTCAGGGACAGAAGATGATAACAAAGCAGCTATATCCTCCTACTGGAAAATCCGTTGTGGTGGTGGAGTCGGTTACAAAAGCCAATGTTATTCAAAAATATCTTGGTGATATGTATGAAGTCTTGCCTAGCCATGGTCACGTAAGAGATTTGGCTGCAAGGTCAGGATCGGTGCGGCCTGATGATGATTTTAGTATGGTTTGGGAGGTTCCGGCAACTGCCTGGACCCATCTCAAGAGCATTAAGGTTTCATTGAGTGGAGCTGAAAATCTAATTCTTGCCTCTGATCCTGATCGCGAAGGAGAGGCCATTGCTTGGCACATTATTGAGATGCTGCAGCAACAAGATGCTTTGCATGAAGGGGTTAATGTATCGAGGGTTGTTTTTCATGAAATAACTGAGACATCTATCAAGAGTGCTTTGCTATCTCCAAGAGAAATTGATGTCAATTTGGTTCACGCTTACCTTGCCCGTCGGGCATTAGATTATTTGATTGGATTTAACATTTCTCCATTGCTGTGGAGAAAACTACCAGGTTGCCAATCAGCTGGTCGTGTCCAATCTGCTGCTCTTTCTCTTATATGTGATAGAGAAACAGAAATTGACGAATTTCGACCACAAGAGTATTGGACAATTATGGTCAAGATGAATGAGATTAATTCTGGTTCTGCTGTGCATGGGTTATCTGTCTCTGCACACTTGACCCATTTTAATCATGCAAAGTTGAATCAGTTTTCCATCAGTTCTTCTGTGGAGGCAAAGAATATTGAACATAAAATTCACTCGGAAAATTTTCAGGTTGTCAGTTCTAAAAAGAGCAAGATGCGTAAAAATCCTCCCACGCCATTTATAACATCAACACTTCAGCAGGATGCAGCTAATAAGTTGTATTTTTCTGCATCATATACAATGAGGATTCTAAGACCAAGTGAATCTCTAATTTATCCCATCTTATATTTTCTTGTTTTCAATTTTTTATTTCACTTTTCTCTTCCTCATATTAAGTTTTTAATACAGCTTGCTCAGAAACTTTACGAAGGGATCCAGTTGCCTGATGGTAGTGCTGTGGGTTTGATAACTTATACCAGAACAGATGGATTGCACATTTCTGATGAAGCTGTCAGGGACATTCGATCCATGGTTACTCAAAGGTATGGGCCTAATTTTGCCATGGAGGGTCCTCGCAAATACTTTAAGAAGGTCAAGAATGCTCAAGAGGCCCATGAAGCAATTAGACCCACTGATATGAGGAGAATACCATCAATGCTTGTTGGGGTTCTTGATGAAGACTCCCACAAATTATATTCTCTTATTTGGTCTCAGACAATGGCATGCCAAATGGAACCTTGCATCATTGAACAGATACAAGTCGATATTGGAAGTGCTGGTGGTTCTATAATTTTCAGATCTGCATCCTCAAGAGTTCAGTTTCTTGGATATCAGGCAGTTTTTGAGGATTCAGAGGCCAAAGTTTTAGGAAATATAGAAAATGAAGTGAACGGACGTGAAGAAGCTTTTGAAGTTCTAAGTTCATTGAAGGTGGGTGATCAAATGAATCTTAGTGAAATGGATGTCAATCAACACTTTAGTCAGCCTCCTTCACGCTACTCTGAGGGAACCCTGGTTAAGAAGCTGGAGGAGCTAGGAATTGGAAGACCTTCAACTTATGCTATTACTTTAAAAGTATTACAGGACAGAAACTATGTGACAGTGAAAAACCGAGTACTCTATCCAGAATTTCGTGGGCGGATGGTGTCTGCATTTCTTGGTCACCTTTTTTCAGAGGTTACGGATTATAGTTTCACTGCTGATATGGAGACTGAGCTCGATAATGTTTCTGCTGGCTTAACTGAGTGGAAAGGCCTCCTCAGAGATTATTGGACTCGGTTCAGCTCTTACTGTGATCATGCTAGTGGTGTTCATATTCATCAGGTGGAAAAGATGTTGGAAAAAAAATTTGGAGATTTTTTGTTTTCTTTTCTTTCCGATAAATGTAGGACGTGCCCCAGTTGTATGGAGGGCACTTTAATTTTCAAAGTAAGTCGATTTGGAGCAGGTTATTTCATAGGTTGTGACCAACATCCAAGGTGCAAGTACATTGCTAAGACATTATATGGTCATGATGATGAAGAAGTTACACCTCAAACTAACGACAGCGTAGAAGAACCTATAATACTAGGTCTTCATCCAGGTTCCAATGAAAAGATTCTTTTGAAGAGTGGTCCTTACGGATCTTACGTACAGCTTGGTGAAGACAGAAAAGGATACTTGCCAAAAAGAGCATCCCTTTCCCATATAAAAGATGTTGACTCTGTTAAGCTCGAAGATGCCATCGAGTTACTACGATATCCGGTGACTCTGGGCAACCATCCGAAGGATGGACAGCCAGTCTTAGTGAAGGTTGCGAAGGTTGGGTTTTCGATCAGACATAGACGGACGATAGCTCCTGTGCCTAAGAATCTGAAGCCTAATGAGATTAGCTTAGAGAAAGCCTTGGAACTTCTGTCGAGTAAAGACGTAAAACGATGTGGCCGACCCAAGAAGAAGCGGGGGGAAGAATCCATTGAAGCCTTGTAG 3492 40.55 LVLQLQCRSLHNFPGSFVPSVPFNPASSWTETSYVSFRKGGVAFVIKKGRLEVGRCYRGLTGLGDGPKPFSVIPSRLEYNFLDSGASLKVTSQGSLNNKIDFSFLNYGFFAKRFLSHDTGVGNKISSKKLYDARSGSSNIPYKGFKKNWKKAKAVTAFSHNGSSSSNTMASSKVEARMSGKLLGGPVEENSEMVLSSSIIGSKVNKKKKPRTKESKEEKCSMDVAAEVDALKSSRDIEDGNSIIRNHGHNKESTTKVTMEKVTGHASTKPQSNKKRANSGSKGKSVEAANVTSQKQAQGAKGRLKPQGQKMITKQLYPPTGKSVVVVESVTKANVIQKYLGDMYEVLPSHGHVRDLAARSGSVRPDDDFSMVWEVPATAWTHLKSIKVSLSGAENLILASDPDREGEAIAWHIIEMLQQQDALHEGVNVSRVVFHEITETSIKSALLSPREIDVNLVHAYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDRETEIDEFRPQEYWTIMVKMNEINSGSAVHGLSVSAHLTHFNHAKLNQFSISSSVEAKNIEHKIHSENFQVVSSKKSKMRKNPPTPFITSTLQQDAANKLYFSASYTMRILRPSESLIYPILYFLVFNFLFHFSLPHIKFLIQLAQKLYEGIQLPDGSAVGLITYTRTDGLHISDEAVRDIRSMVTQRYGPNFAMEGPRKYFKKVKNAQEAHEAIRPTDMRRIPSMLVGVLDEDSHKLYSLIWSQTMACQMEPCIIEQIQVDIGSAGGSIIFRSASSRVQFLGYQAVFEDSEAKVLGNIENEVNGREEAFEVLSSLKVGDQMNLSEMDVNQHFSQPPSRYSEGTLVKKLEELGIGRPSTYAITLKVLQDRNYVTVKNRVLYPEFRGRMVSAFLGHLFSEVTDYSFTADMETELDNVSAGLTEWKGLLRDYWTRFSSYCDHASGVHIHQVEKMLEKKFGDFLFSFLSDKCRTCPSCMEGTLIFKVSRFGAGYFIGCDQHPRCKYIAKTLYGHDDEEVTPQTNDSVEEPIILGLHPGSNEKILLKSGPYGSYVQLGEDRKGYLPKRASLSHIKDVDSVKLEDAIELLRYPVTLGNHPKDGQPVLVKVAKVGFSIRHRRTIAPVPKNLKPNEISLEKALELLSSKDVKRCGRPKKKRGEESIEAL 1163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1559948 1571752 + Bpe008072.1 Bpe02g00226 98375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00226 1163 SMART toprim5 322 422 IPR006171 -
Bpe02g00226 1163 MobiDBLite consensus disorder prediction 238 309 - -
Bpe02g00226 1163 MobiDBLite consensus disorder prediction 202 221 - -
Bpe02g00226 1163 Pfam Toprim domain 324 437 IPR006171 -
Bpe02g00226 1163 PANTHER BNAA01G05990D PROTEIN 250 611 - -
Bpe02g00226 1163 MobiDBLite consensus disorder prediction 259 300 - -
Bpe02g00226 1163 Pfam Topoisomerase C-terminal repeat 1095 1144 IPR025589 -
Bpe02g00226 1163 Pfam Topoisomerase C-terminal repeat 1034 1092 IPR025589 -
Bpe02g00226 1163 Gene3D Bacterial Topoisomerase I, domain 1 967 1015 - -
Bpe02g00226 1163 Hamap DNA topoisomerase 1 [topA]. 322 1116 IPR028612 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 ProSiteProfiles Toprim domain profile. 322 437 IPR006171 -
Bpe02g00226 1163 Gene3D Topoisomerase I, domain 2 800 946 IPR013824 -
Bpe02g00226 1163 Pfam Topoisomerase DNA binding C4 zinc finger 971 1007 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Bpe02g00226 1163 PANTHER BNAA01G05990D PROTEIN 640 1154 - -
Bpe02g00226 1163 SMART topIaneu2 576 891 IPR003602 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 Gene3D - 319 458 - -
Bpe02g00226 1163 PRINTS Prokaryotic DNA topoisomerase I signature 661 670 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 PRINTS Prokaryotic DNA topoisomerase I signature 739 755 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 PRINTS Prokaryotic DNA topoisomerase I signature 396 409 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 PRINTS Prokaryotic DNA topoisomerase I signature 486 504 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 PRINTS Prokaryotic DNA topoisomerase I signature 854 868 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 SUPERFAMILY Prokaryotic type I DNA topoisomerase 322 612 IPR023405 -
Bpe02g00226 1163 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 640 1154 IPR000380 GO:0003677|GO:0003917|GO:0006265
Bpe02g00226 1163 CDD TOPRIM_TopoIA_TopoI 322 449 IPR034149 -
Bpe02g00226 1163 SMART topIban2 428 516 IPR003601 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 Gene3D Topoisomerase I, domain 2 459 613 IPR013824 -
Bpe02g00226 1163 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 250 611 IPR000380 GO:0003677|GO:0003917|GO:0006265
Bpe02g00226 1163 MobiDBLite consensus disorder prediction 238 258 - -
Bpe02g00226 1163 CDD TOP1Ac 455 938 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 647 670 IPR023406 GO:0003917
Bpe02g00226 1163 Gene3D Topoisomerase I, domain 4 632 753 IPR013826 -
Bpe02g00226 1163 SUPERFAMILY Prokaryotic type I DNA topoisomerase 643 978 IPR023405 -
Bpe02g00226 1163 Pfam DNA topoisomerase 452 612 IPR013497 GO:0003677|GO:0003916|GO:0006265
Bpe02g00226 1163 Pfam DNA topoisomerase 643 927 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00226 - - - zju:107429950 1367.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00226 Bpe04g00097 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00226 Bpe-Chr2:1559948 Bpe10g00267 Bpe-Chr10:9961430 1.68E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g248 . . . . . Bpe02g00226 . . . . Cma01g01584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01631 . Cma09g00537 . . . . . . . . . . . . . . . . . . . . . . Cme04g00321
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006908 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00226 Bpe_Chr02 FPKM 0.204208 0.0 0.704535 0.524788 0.556282 0.280017 1.097503 0.0 0.0 0.164242