Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00232 ATGGTGGAAGCTGAAAGAATTGAAAATCTTGAATTTAAATGGGGTAAAAGGAGAGGAATTGGCAGGGAAAATAAAGACATAACGTTTTACGAATCTTTTACATATGAGGGTGTTGACTATACACTTTATGACTCTGTTTATCTTTACAAGGATGGAGAATCTGAACCATTTGTTGGGAAACTAGTAAGAATCTGGGAGAATCCTAATAAGTCAAAAAAAGTGAAGATTTTATGGTTTTTCCGTCCTCATGAGATTGTCAATTTTCTTGGTTCTGAGGACACACGTCATAATGAATTGTTTTTGGCATCAGGCGAGGGGATTGGTCTTGCAAATACTAATCCTTTGGAAGCAATTTGTGGAAAATGTAATGTTGTCTGCATTTCAAAAGACAGCAGAAATACACAACCTTCGGTCGAAGAGGTCCAAATGGCTGACTTTCTTTTTTATCGCACCTTTGATGTTGGTTGCCGGAAGATTCTTGAGAAGATAAGTGAGAAAATTGCTGGTATAGAAGTTAAATTTTTACTGAATAATCCTCACAAGCCGGGCAAGGAAGAAGTTAGAAGAAATGAAATCTCTAGACTTGAGGCAAATGTTCCTTCTAGACACAAGTCATCTGATGAAAGTTTGACATTAAGGGTGAAAGGAAAAGTAGATAATTTTCCAAATGATCATTCCAAAACATTATTGGCTAAACATATTTCTTCCCTCGGTAAGAATTATGGTCCTGGTGATGGTGTGGAAAAAGATCGAGTGAATAAAAGTCTGTATACTGATGCCAAAAATCATTTAAGAGCTGTTAATTCTGCAGAGAGAGTAAAACGTAGCAATGATAATGGTGAATTTGACCAAGGGCCATCGAAACTGTACCAAAGGCCTCCAAAGAAAGCCTGGACTGATAGTTCTGTTCAATTTTCTATTGACAAGAATAAAAATAGTGTACAGAAGTTATACAATGATTTCAGGATAAACATGAATAACTCTGTAGATGTAAGTGATTCTCATCGAGCAGACAAAATCCCTGGAAGGAAGCTGCGACCAGATGAGAAGCTAACAAAACTTTCTAGTGTAAAGATGCCTGAAACATTGTCACTGACTAATCTTAGTAAGGACAACAAAGTTGATAGTCGACTCGTGGAAGTTACTAGAAGACCTGGTCCTGATAGAAGCAGATGGTTTAAAGGACTTCCTTGGGAAGAGAGACTGAAAACTGCTAGTGATCAGGGAACACTAGTTCTATTTCAGAATTTAGATCCAGATTTTACTTCAGGAGAAGTAGAGGATATTGTTTGGCATGCTTTCAGTGAAAGTTGCACTGCAAAAATGATTCAGAAGACTGCATTTTTGTTCCCTCATTCTGGTCAAGCTTATGTCATTTTTAAAACAAGGGAAGCTGCGGAAAAGGCTCTTACAAAATTAGACGAAGGCTGCTTACTTCTTTCAAGTGGAAGGCAGCTTGTTGGCAGCATTGCTACTCCATACTTCCGAACAACGAAACCAGCATTTTTTGGTCACATCGTTCTTGATAAACAAAGATTTCATATGCAACGGGGGATGAAAGATGCTATATCTACTTCGCATTGCTCTCAACCTAACACCATTGAATATGACATGGCATTGGAGTGGTGTTTATTACAAGAAAAATCAGACCGAGCATGGGAAAAGTTACACAAGCTACAAGAAAGGGAGTTAAGCAAACTAAAGGCCATACGACGTCCTAACTGA 1725 37.97 MVEAERIENLEFKWGKRRGIGRENKDITFYESFTYEGVDYTLYDSVYLYKDGESEPFVGKLVRIWENPNKSKKVKILWFFRPHEIVNFLGSEDTRHNELFLASGEGIGLANTNPLEAICGKCNVVCISKDSRNTQPSVEEVQMADFLFYRTFDVGCRKILEKISEKIAGIEVKFLLNNPHKPGKEEVRRNEISRLEANVPSRHKSSDESLTLRVKGKVDNFPNDHSKTLLAKHISSLGKNYGPGDGVEKDRVNKSLYTDAKNHLRAVNSAERVKRSNDNGEFDQGPSKLYQRPPKKAWTDSSVQFSIDKNKNSVQKLYNDFRINMNNSVDVSDSHRADKIPGRKLRPDEKLTKLSSVKMPETLSLTNLSKDNKVDSRLVEVTRRPGPDRSRWFKGLPWEERLKTASDQGTLVLFQNLDPDFTSGEVEDIVWHAFSESCTAKMIQKTAFLFPHSGQAYVIFKTREAAEKALTKLDEGCLLLSSGRQLVGSIATPYFRTTKPAFFGHIVLDKQRFHMQRGMKDAISTSHCSQPNTIEYDMALEWCLLQEKSDRAWEKLHKLQERELSKLKAIRRPN 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1586414 1593686 - Bpe008076.1 Bpe02g00232 98381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00232 574 Pfam BAH domain 40 145 IPR001025 GO:0003682
Bpe02g00232 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 410 493 IPR000504 GO:0003723
Bpe02g00232 574 CDD RRM_SF 412 474 - -
Bpe02g00232 574 PANTHER PROTEIN ANTI-SILENCING 1 1 569 - -
Bpe02g00232 574 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682
Bpe02g00232 574 PANTHER PROTEIN ANTI-SILENCING 1 1 569 - -
Bpe02g00232 574 SUPERFAMILY RNA-binding domain, RBD 403 492 IPR035979 GO:0003676
Bpe02g00232 574 MobiDBLite consensus disorder prediction 267 296 - -
Bpe02g00232 574 MobiDBLite consensus disorder prediction 267 281 - -
Bpe02g00232 574 Gene3D - 8 162 IPR043151 -
Bpe02g00232 574 Gene3D - 398 497 IPR012677 -
Bpe02g00232 574 SMART BAH_4 38 164 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00232 - - - mcha:111007160 584.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00232 Bpe-Chr2:1586414 Bpe12g00732 Bpe-Chr12:12812380 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00232 Bpe_Chr02 FPKM 8.273798 8.682278 14.305378 14.381895 15.213636 13.93571 14.842097 8.316566 7.732013 8.081662