Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00233 ATGAATGTAGGCAAAAAGCTGGCCCTGAACTTAAAACAAACTCCAAACCCAGCCAGTTTCTTGCCTAGAAAAGTCGCCCAAACAATACCCTTCTCGTCAAAGAGTCTCCAACAAATCTTCACTCGGTTTTCGGTCTCGCCCAGGTCGCCAGAAGCCGAGACGATCAAGAACGCGATACAGGAATGTGAAGCGCCTGGGATAAGAGGAGAGGAAAAATACTGTGCAACTTCATTAGAGTCGATGCTAGATTTCATCGTTTCCAAGCTGGGAAAAAACGTAGGGGCCATCTCTACAGAGCTTGCCGTGGTAGCTAGCCATGCCGCCTTGTCCCCCCAGCAGTATTGGAAATCTGCGCTGCCAAACACCCCAATTCCGGAATTCATCAGAGATCTCCTCGTGCCTGACCTGGGGGAAGAGAAAAACACTGCTGTCGACGTCGGGAAGGGAGGTGTTCACGTCATAACCGACAAAGGAAAGGCAGGTAGGGGAACCCATGTGGACGTCAGCGGGAAAGGAGGTGTCGGAGTTCACACCGGACCGACTAGCGGAGGAGCTGACGTCGGCGTTGGCAAAGGAGGAGTTAATGTGTACGCACACCACAAAGGAAAACCTGACATGTACGCCGGCAACAAAATCACAGCCCACTTCCCTAAAACTCCAGCCGCCGCAACTTTCTTGCCACGCGAAGTTTCCAAGACAGTACCCTTCTCGTCGGGCAAACTCCCACAGATATTCAATTGGTTTTCGGTGAAACCAGGATCGCCGGAAGCCGAAACGATGACGAACACAATAAGAGATTGCGAAGCTCCGGCGATAAGAGGAGAGCAGAAGTACTGCGCAACTTCTCTAGAGTCCATGATTGACTTCGCCAGTTCAATGCTCGGAAAAAATGTCGAAGCCATCTCTACAGAGGTTGAAAAAGACACCGCAAAAGTACAGAGCTATACAATTCAAGTCGGAGTAAAGAAGATGTCAAAGAGTGCGAAATCTGTTGTCTGCCACAGACTGAACTACGCCTATGCCGTGTTTTACTGTCACGCAACCGTAGCAACGACAGCTTATAAGATTCCGTTGGTGGGCGCCGATGGCACAAAAGTGAGCGCCGTCGCAATCTGCCATACCAACACAGCAGCTTGGAATCCAAAGCATTTGGCTTTCCAAGTGCTGAAAGTTAATCCAGGAACAGTCCCAATCTGTCATTTCATTCCGAAGGATCATCTCGTCTGGGCTTCCAAATAG 1239 50.04 MNVGKKLALNLKQTPNPASFLPRKVAQTIPFSSKSLQQIFTRFSVSPRSPEAETIKNAIQECEAPGIRGEEKYCATSLESMLDFIVSKLGKNVGAISTELAVVASHAALSPQQYWKSALPNTPIPEFIRDLLVPDLGEEKNTAVDVGKGGVHVITDKGKAGRGTHVDVSGKGGVGVHTGPTSGGADVGVGKGGVNVYAHHKGKPDMYAGNKITAHFPKTPAAATFLPREVSKTVPFSSGKLPQIFNWFSVKPGSPEAETMTNTIRDCEAPAIRGEQKYCATSLESMIDFASSMLGKNVEAISTEVEKDTAKVQSYTIQVGVKKMSKSAKSVVCHRLNYAYAVFYCHATVATTAYKIPLVGADGTKVSAVAICHTNTAAWNPKHLAFQVLKVNPGTVPICHFIPKDHLVWASK 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1596299 1600882 - Bpe008077.1 Bpe02g00233 98382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00233 412 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 4 100 IPR044816 -
Bpe02g00233 412 MobiDBLite consensus disorder prediction 157 187 - -
Bpe02g00233 412 PANTHER BURP DOMAIN PROTEIN RD22 4 100 - -
Bpe02g00233 412 SMART BURP_2 1 189 IPR004873 -
Bpe02g00233 412 SMART BURP_2 198 412 IPR004873 -
Bpe02g00233 412 ProSiteProfiles BURP domain profile. 1 102 IPR004873 -
Bpe02g00233 412 ProSiteProfiles BURP domain profile. 200 412 IPR004873 -
Bpe02g00233 412 Pfam BURP domain 205 410 IPR004873 -
Bpe02g00233 412 Pfam BURP domain 2 103 IPR004873 -
Bpe02g00233 412 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 102 410 IPR044816 -
Bpe02g00233 412 PANTHER BURP DOMAIN PROTEIN RD22 102 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00233 - - - cit:102618521 400.979
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00233 Bpe-Chr2:1596299 Bpe07g00443 Bpe-Chr7:5666307 4.40E-15 dispersed
Bpe02g00233 Bpe-Chr2:1596299 Bpe12g00076 Bpe-Chr12:529800 1.51E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g350 . . . . . Bpe02g00233 . . Cmo05g00420 . . . Car09g00480 . . . Cpe06g00415 . . . . . . . . . . . . . . . . . . Lsi04g02218 . . . . . . . . . . . . . Cmo09g00538 . . . Car05g00343 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010252 2 1 0 2 1 1 1 0 1 0 1 1 0 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 4 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00233 Bpe_Chr02 FPKM 0.16568 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0