Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00252 ATGGTGTTGCCGTGCTCGTCTTGGTTGGCTTCTGCATCGCCGCAGGTCCCCGCGATGTTCGTGTTTGGAGACTCATTGGTCGACGTTGGCAACAACAATTATCTCAGCTCAATTGCCAGATCAAACTACGCTCCTTATGGCTGCGATTTCAGTGGTGGTCCGACTGGAAGATTTTCTAATGGAAAAACATTGGTCGACATGTTTGCTGACTTTCTCGGAGTTCCTTATCCGCCGCCGTTTAAAGACCCCAATGCAGTAGGAGGCAGAATACTCAACGGGGTTAATTATGCTTCTGCTGCTGCTGGCATTCTTGATGAAACTGGCCAAAATTACGGAGAAAGACACAGTCTTAGCCAGCAAGTGGTTAATTTCGAAACGACGCTGAATCAGCTAAGGGGGATGATGAGTGGAGGAAACCTGACCCAGTACCTTGCCAAATCCATCGTCGTTTTAGTGTTTGGAAGTAACGACTACATCAACAACTATCTCCTCCCTTCCCTTTACACTTCCAGCCTCACATACACTCCTCCTCAGTTCGCCAACCTTCTTCTCAACCACTATGCCCGTCAACTTCTGGCATTGCACAGCGTAGGGTTAAGGAAATTTATGGTGGCTGGAGTGGGACCATTGGGTTGCATTCCGAATCAGAGGGCCACCGGAGTAGCTCCGGCGGGAAGATGCTTGGATTCCGTGAATGAAATCCTTGGAACTGTGAACCAAGGTCTTCGATCACTCATAGACCAGCTAAACTCCAACCACCCGGGAGCCATCTTCGTTTACGCCAACACCTACGGCGCCGTCGGCGACATCCTGAACAACCCGGCCACCTACGGTTTCAGCACGGTGGATAAGGGATGCTGCGGAATAGGGAGAAACAGAGGGCAAATAACGTGTCTTCCCTACGAACTTCCATGCTCCGACCGGACGAGGTATGTATTTTGGGACGCCTTTCATCCAACCGAAGCTGCCACCGCCGTTCTTGCATGGAGGGCATTTAAAGGCCCACCATCTGACTGTCATCCAATCAATCTCCAACAAATGTCTCTCCTTTGA 1053 50.43 MVLPCSSWLASASPQVPAMFVFGDSLVDVGNNNYLSSIARSNYAPYGCDFSGGPTGRFSNGKTLVDMFADFLGVPYPPPFKDPNAVGGRILNGVNYASAAAGILDETGQNYGERHSLSQQVVNFETTLNQLRGMMSGGNLTQYLAKSIVVLVFGSNDYINNYLLPSLYTSSLTYTPPQFANLLLNHYARQLLALHSVGLRKFMVAGVGPLGCIPNQRATGVAPAGRCLDSVNEILGTVNQGLRSLIDQLNSNHPGAIFVYANTYGAVGDILNNPATYGFSTVDKGCCGIGRNRGQITCLPYELPCSDRTRYVFWDAFHPTEAATAVLAWRAFKGPPSDCHPINLQQMSLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1716456 1717971 + Bpe008097.1 Bpe02g00252 98401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00252 350 Gene3D SGNH hydrolase 7 334 IPR036514 -
Bpe02g00252 350 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 10 348 - -
Bpe02g00252 350 Pfam GDSL-like Lipase/Acylhydrolase 20 328 IPR001087 GO:0016788
Bpe02g00252 350 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 10 348 - -
Bpe02g00252 350 CDD SGNH_plant_lipase_like 17 335 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00252 - - - jre:109012926 530.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00252 Bpe-Chr2:1716456 Bpe11g01117 Bpe-Chr11:8345167 4.21E-114 dispersed
Bpe04g00382 Bpe-Chr4:2404290 Bpe02g00252 Bpe-Chr2:1716456 2.63E-68 dispersed
Bpe11g00371 Bpe-Chr11:2818525 Bpe02g00252 Bpe-Chr2:1716456 3.68E-81 dispersed
Bpe02g00252 Bpe-Chr2:1716456 Bpe02g00274 Bpe-Chr2:1842290 4.17E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1760 Blo01g01690 Blo12g00809 . Bda03g00365 Bpe02g00252 . Bma04g00342 Bma01g02456 . . . Cma09g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00252 Bpe_Chr02 FPKM 20.972906 25.60685 59.779942 57.950691 12.579427 12.253574 10.96533 55.577278 59.120377 56.173931