Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00284 AGGAAGAGAACAATGACGAGCCGGAGCAAACCTTTGGTGAAGACAAGATCGTCTCTCCTACAGAGATATTCATCAATGGAGTTTACTAACCCGTCCGATCCATCTGCTAAGCTTCCCATGAAGAAGCCGACGACGCCCCCCAATCTGGAATATCCTTCCTCTCCTCAGAATGTGTATGGAGAACAGATTCTTCATTGGTGTCATCCAAGACATCCTCTGACGCAACTGAGTCTGCCGGAGCTCTTCACCTGCGCGGCCTGCAAGGAGTACGGAGCCGGAAAAAGGTTCACCTGCTCCCTCTGTAACTTTCAGCTCCATGAGTTTTGCGCTTTGGCTCCGCCGGCCCTCAAGAGCCACCCTTTCCACTTCCAACATTCCTTAGCATTCCAATTCCGACCAGTGAAGGGAGGAATCATGCAATCCAAGTGTGACGCTTGCTGGAAGCCAGTCAAAGGATGTGCATTCCGATGTGGCGCCTGCAGTTTTCAGATGCACCCTTGTTGTGCAATGCTGCCATTAGAACTAAACTTGTCCATTCATCCACACACCCTCAGACTTCTACCGGCAGCCTGCTCGACCGGAGGAGATCACATCTTCGAATGCGGGGAATGCAAGAGAAGGCGGTCTGGACGGGTCTACCATTGCACGACATGCGATTACCATCTCCACACAATATGCGCTAAGGATTTCATAAACGGCCTCCGAGACAATGGCATCAAAGGCCCGGAGAAACCGAGTGTGCTCGGAAAAGCAGCTCGTTTGGCTTCTCAAGTGGTGGTCGAATTCATCGGAGGGCTCATCGAGGGAATCGGTGAAGGTGTCGGAGAAGTCTTGGTTCAAAACATGGCAAGAGGAAGGGGCCAACGATAA 870 51.72 RKRTMTSRSKPLVKTRSSLLQRYSSMEFTNPSDPSAKLPMKKPTTPPNLEYPSSPQNVYGEQILHWCHPRHPLTQLSLPELFTCAACKEYGAGKRFTCSLCNFQLHEFCALAPPALKSHPFHFQHSLAFQFRPVKGGIMQSKCDACWKPVKGCAFRCGACSFQMHPCCAMLPLELNLSIHPHTLRLLPAACSTGGDHIFECGECKRRRSGRVYHCTTCDYHLHTICAKDFINGLRDNGIKGPEKPSVLGKAARLASQVVVEFIGGLIEGIGEGVGEVLVQNMARGRGQR 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1893031 1894280 + Bpe008128.1 Bpe02g00284 98433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00284 289 Pfam C1 domain 67 110 IPR004146 -
Bpe02g00284 289 Pfam C1 domain 179 227 IPR004146 -
Bpe02g00284 289 SUPERFAMILY Cysteine-rich domain 93 182 IPR046349 -
Bpe02g00284 289 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN 45 287 - -
Bpe02g00284 289 MobiDBLite consensus disorder prediction 24 52 - -
Bpe02g00284 289 PANTHER CYSTEINE/HISTIDINE-RICH C1 DOMAIN PROTEIN 45 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00284 - - - pxb:103938763 360.147
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00284 Bpe-Chr2:1893031 Bpe07g00412 Bpe-Chr7:4169339 1.51E-23 dispersed
Bpe02g00284 Bpe-Chr2:1893031 Bpe05g00350 Bpe-Chr5:17455092 5.75E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g23 Blo01g01659 . . . Bpe02g00284 . . . . . . Cma09g00008 . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02438 Csa04g02751 . . . . . . . . . . . . Cmo09g00009 . . . Car09g00008 . . . . . . . . . Cla11g01864 Cam11g1933 Cec11g1958 Cco11g1972 Clacu11g2098 Cmu11g1900 Cre11g2309 . . Chy07g00440 Cme07g00010
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012721 1 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00284 Bpe_Chr02 FPKM 7.138792 8.191914 16.170298 14.62276 11.468696 12.010921 11.141634 15.627 14.903576 14.493062