Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00290 ATTGCCATGGATTCCGATTACGGTATTCTTCGAGAGCTCTCTGATCTTCAGAAGCTTCGTTCCCTCTACCAACCAGAACTTCCTCCTTGTCTCCAGGGAACAACAGTGCGAGTTGAATTTGGTGATGCAACCACAGCTCTTGATCCTACAGATGGCCCCACCATTATCCGGTCCTTTCCCAGTACTTATGGACAACCATTAGCTCACTTTCTGCGGGCAACTGCCAAAGTTGCAGATGCTCATATTATCTCTGAGCATCCTACCATTAGGGTGGGTGTCGTTTTTTGTGGGAGACAATCTCCAGGAGGCCACAATGTCATTTGGGGTCTTTCGAATGCTTTGAAAGCTCACAACCCCAATAATACGCTACTTGGATTTATGGGTGGTTCAGAAGGATTATTTGCCCAGAAAACTCTTGAGATAACTGATGATATTCTTTTATCTTATAGAAATCAAGGTGGTTATGATTTGCTGGGAAGGACAAAAGACCAAATTCGAACAACTGATCAAGTTAATGCTGCATTAGCTACATGCAAAAACTTGAACTTAGATGGTCTTGTTATTATTGGAGGTGTCACGTCTAACACTGATGCAGCTCAGCTGGCAGAAATATTTGCAAAAGCTCAATGTCGGACGAAGGTGGTTGGGGTTCCTGTGACTCTGAATGGAGATCTAAAGAACCAATTTGTGGAAACTAATGTTGGTTTTGACACAATTTCTAAGGTCAATTCCCAGCTCATTAGCAACGTCTGCACTGATGCTCTTTCTGCAGAAAAGTACTATTATTTCATCCGACTAATGGGCCGAAAAGCATCCCATGTTGCGCTGGAGTGCACCCTTCAGTCCCATCCTAATATGGTAATCCTTGGTGAAGAGGTGGCTGCATCCAAACTTACACTTTTTGACCTGACCAAACAGATATGTGATGCAGTTCAGGCCAGGGCCGAGCAAGACAAGTACCATGGTGTCATCCTAATACCAGAAGGTCTCATTGAAAGCATTCCTGAAGTATATTCTCTTTTGAAGGAAATTCATGGTTTGCTAAAGCAAGGTGTCCCTGTGGAGAAAATTTCGTCTCATCTCTCACCATGGGCCTCAGCGTTGTTTGAATTTTTGCCAATTTTTATTAAGAAACAGTTGGTACTTCATCCTGAATCAGATGACTCTGCACAGTTATCTCAGATTGAAACAGAAAAGCTACTTGCGCATCTTGTGGAGGCTGAAATCAACAAGCGGCTGAAAGAAGGGACTTACACGGGGAAGAAGTTCAATGCTATCTGCCACTTTTTTGGGTACCAAGCTCGAGGATCTTTACCTTCCAAGTTTGACTGTGATTATGCCTATGTTCTTGGCCACATTTGCTACCACATTTTAGCGGCTGGTTTGAATGGTTATATGGCTACTGTGACAAACCTTAAGAGTCCTGTGTCTAAGTGGCGATGTGGCGCTGCTCCAATTGCTGTCATGATGACTGTGAGGCGCTGGTCTCAAAATCCAGGAGCCACTTCATTTGGAAAACCTGCCATTCATCCGGCAACTGTGGATTTGAAGGGCAAAGCATATGATCTGTTGAGACAAAATGCGACAAAATTTCTCATGGACGATCTCTATAGGAATCCAGGACCTCTTCAGTTTGAAGGTCCTGGAGCTGATTCAAAGGCAGTAAGTCTTTGTGTCGAGGATCAGGATTACATGGGACGTATCAAGCAATTACAGGAGTATCTTGATAAGGTCCGAACAATCGTAAAACCAGGATGTTCGCAGGAAGTTCTGAAAGCGGCCTTGAGTGTCATGGCTTCCGTAACAGATGTTCTCACTGCTATGTCATCACCTTCATTTGGTGGCCAGACACTTTAA 1857 43.94 IAMDSDYGILRELSDLQKLRSLYQPELPPCLQGTTVRVEFGDATTALDPTDGPTIIRSFPSTYGQPLAHFLRATAKVADAHIISEHPTIRVGVVFCGRQSPGGHNVIWGLSNALKAHNPNNTLLGFMGGSEGLFAQKTLEITDDILLSYRNQGGYDLLGRTKDQIRTTDQVNAALATCKNLNLDGLVIIGGVTSNTDAAQLAEIFAKAQCRTKVVGVPVTLNGDLKNQFVETNVGFDTISKVNSQLISNVCTDALSAEKYYYFIRLMGRKASHVALECTLQSHPNMVILGEEVAASKLTLFDLTKQICDAVQARAEQDKYHGVILIPEGLIESIPEVYSLLKEIHGLLKQGVPVEKISSHLSPWASALFEFLPIFIKKQLVLHPESDDSAQLSQIETEKLLAHLVEAEINKRLKEGTYTGKKFNAICHFFGYQARGSLPSKFDCDYAYVLGHICYHILAAGLNGYMATVTNLKSPVSKWRCGAAPIAVMMTVRRWSQNPGATSFGKPAIHPATVDLKGKAYDLLRQNATKFLMDDLYRNPGPLQFEGPGADSKAVSLCVEDQDYMGRIKQLQEYLDKVRTIVKPGCSQEVLKAALSVMASVTDVLTAMSSPSFGGQTL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1913946 1919932 + Bpe008134.1 Bpe02g00290 98439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00290 618 PIRSF PPi_PFK_PfpB 6 572 IPR011183 GO:0005524|GO:0006096|GO:0047334
Bpe02g00290 618 TIGRFAM PFKA_PPi: diphosphate--fructose-6-phosphate 1-phosphotransferase 16 560 IPR011183 GO:0005524|GO:0006096|GO:0047334
Bpe02g00290 618 Gene3D Phosphofructokinase; domain 3 334 398 - -
Bpe02g00290 618 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE 3 612 - -
Bpe02g00290 618 Pfam Phosphofructokinase 90 456 IPR000023 GO:0003872|GO:0006096
Bpe02g00290 618 Gene3D - 20 514 - -
Bpe02g00290 618 SUPERFAMILY Phosphofructokinase 14 558 IPR035966 GO:0003872|GO:0006096
Bpe02g00290 618 Hamap Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 12 563 IPR011183 GO:0005524|GO:0006096|GO:0047334
Bpe02g00290 618 Gene3D Phosphofructokinase domain 236 549 IPR035966 GO:0003872|GO:0006096
Bpe02g00290 618 PANTHER PYROPHOSPHATE--FRUCTOSE 6-PHOSPHATE 1-PHOSPHOTRANSFERASE SUBUNIT ALPHA 3 612 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00290 K00895 pfp, PFP; diphosphate-dependent phosphofructokinase [EC:2.7.1.90] - rcu:8273674 1106.66
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00290 Bpe04g00295 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00027 Bpe-Chr1:232912 Bpe02g00290 Bpe-Chr2:1913946 5.38E-125 dispersed
Bpe02g00290 Bpe-Chr2:1913946 Bpe08g00018 Bpe-Chr8:133925 2.80E-128 dispersed
Bpe10g00052 Bpe-Chr10:757750 Bpe02g00290 Bpe-Chr2:1913946 8.83E-06 dispersed
Bpe02g00290 Bpe-Chr2:1913946 Bpe04g00295 Bpe-Chr4:1883206 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g33 . Blo12g00840 . Bda03g00336 Bpe02g00290 Bpe04g00295 Bma04g00304 Bma01g02424 . . Cma01g02045 Cma09g00016 Car01g01611 . . . . . . . . . . . . . . . . . . . . Cone17ag1482 Cone20ag0004 Lsi04g02427 Csa04g02743 . . . . . . . . . . . Cmo01g02102 Cmo09g00015 . . . Car09g00015 . Cpe02g00011 . . . . . . . Cla11g01857 . Cec11g1951 . . Cmu11g1892 . . . Chy07g00431 Cme07g00019
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003456 2 1 2 2 2 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 7 4 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00290 Bpe_Chr02 FPKM 0.0 0.0 0.0 0.0 13.109709 12.074116 12.274368 0.0 0.0 0.0