Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00297 ATGACCCGTCCTCATAGGGTTCTAGTCGGGGATGCGAATGCCCCTGCGAGCGACGACCATCCGCTTATATCCGGTCAAAATGACTCAGACGTCGTCATAATACTCGCCGCTCTGCTCTGCGCCTTAATCTGCGTTCTTGGGCTCATAGCCGTAGCTCGTTGTACCTGGGTTCGACGCCTATCCGGTAACCGTGCCTTAGATTCTGCCTCTACCACAGCTAATTCGTCTAGGCCTTCTTCAAACAAAGGGCTTAAGAAGAAAATCTTGAGGTCTCTCCCTAAAGCCACTTTCAACGGCGAGTCCGATTACCAGCTCTCGGATTGCGCGATCTGCCTCACCGAGTTCGCCATTGGCGATGAAATCCGTGTGCTGCCGCAGTGTGGCCATGTTTTCCACCTCTCCTGCATCGATACATGGTTTCGGTCGCACTCATCCTGCCCATCTTGCCGAAAGGTTCTGGCGGTGTCGAGGTGCCAGAAGTGCGGTGATTTGTCAGCGAGCTCAAGCACTGTTCCAGCAAGTGAAGCCAGATCAAAGGAGAGACAAGATTATGAAAATAGGTTCTTACCCTAG 573 52.71 MTRPHRVLVGDANAPASDDHPLISGQNDSDVVIILAALLCALICVLGLIAVARCTWVRRLSGNRALDSASTTANSSRPSSNKGLKKKILRSLPKATFNGESDYQLSDCAICLTEFAIGDEIRVLPQCGHVFHLSCIDTWFRSHSSCPSCRKVLAVSRCQKCGDLSASSSTVPASEARSKERQDYENRFLP 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1974887 1975459 - Bpe008140.2 Bpe02g00297 98446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00297 190 SMART ring_2 108 149 IPR001841 -
Bpe02g00297 190 SUPERFAMILY RING/U-box 91 155 - -
Bpe02g00297 190 Pfam Ring finger domain 107 150 IPR001841 -
Bpe02g00297 190 PANTHER RING-H2 FINGER PROTEIN ATL8 1 184 - -
Bpe02g00297 190 SMART FANCL_C_2 104 158 - -
Bpe02g00297 190 MobiDBLite consensus disorder prediction 164 190 - -
Bpe02g00297 190 MobiDBLite consensus disorder prediction 176 190 - -
Bpe02g00297 190 CDD RING-H2_PA-TM-RING 107 150 - -
Bpe02g00297 190 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Bpe02g00297 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 155 IPR013083 -
Bpe02g00297 190 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 184 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00297 Bpe-Chr2:1974887 Bpe04g01771 Bpe-Chr4:23295964 1.37E-34 dispersed
Bpe13g00399 Bpe-Chr13:11727019 Bpe02g00297 Bpe-Chr2:1974887 7.67E-18 dispersed
Bpe07g00981 Bpe-Chr7:15551630 Bpe02g00297 Bpe-Chr2:1974887 2.72E-08 transposed
Bpe02g00297 Bpe-Chr2:1974887 Bpe04g00288 Bpe-Chr4:1847097 6.91E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00297 - - csv:101207021 218.779