Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00301 ATGGCCACTCATGCGGCTCTCTCTTCCAGAGTTCCAGCAAACACGAGGCTTCCGTCCAAAAGCTTTCACTCTTTCCCCACTCAATGCTCGCTCTCAAAGGCTTTTCTCTCTCTCCTGGCTGAGTTTTCTGGGCTGAGGTCTACATCTTTGCCATTAGCTCAAAATGCCAGAGAACGGGCAACCTTCTTTGACGTTGTGGCTGCTCAGGTTACTCCAAAGACAGCGGTAAGATCGTTTCCTTGTAAAGGAGAAACAGTTGCAAAACTGAAGGTTGCTATCAATGGATTCGGACGCATTGGCCGGAACTTCCTCCGGTGCTGGCACGGCCGGAAAAACTCACCCCTCGAAGTTGTGGTCGTCAATGACAGTGGTGGCGTCAAGAACGCTTCTCACTTGCTAAAATACGATTCTATGCTTGGAACCTTCAAAGCGGATGTTAAGATCGTTGACAATGAAACCATCAGCGTTGATGGAAAACCCGTCAAGGTTGTTTCTAGCAGGGACCCTCTCAAGCTTCCATGGGCTGAGCTTGGCATTGACATTGTCATTGAAGGAACTGGAGTGTTTGTCGACGGACCAGGAGCGGGGAAACACATTCAAGCAGGTGCGAAGAAGGTCATCATCACAGCTCCAGCCAAAGGAGCTGACATTCCGACATACGTCGTTGGAGTGAACGAGAAAGATTACTCTCACGATGTGGCAAACATCGTTAGTAATGCTTCTTGCACGACAAACTGTCTCGCTCCGTTCGTGAAGGTGATGGATGAAGAATTTGGCATTGTGAAGGGTACCATGACAACAACTCACTCCTATACTGGCGATCAGAGACTCTTGGATGCTTCCCACCGTGACTTGAGGCGAGCCAGGGCTGCGGCTTTGAACATAGTCCCGACAAGTACTGGGGCAGCCAAGGCAGTGTCACTTGTGCTGCCGCAGCTCAAGGGCAAGCTCAATGGCATTGCGCTTCGTGTGCCTACTCCTAATGTTTCGGTGGTGGATTTGGTGGTCAATGTGGCAAAGAAGGGCATCTCGGCAGAGGACGTGAATGCAGCCTTCAGGAAGGCTGCTGAAGGGCCGTTGAAGGGCATTTTGGATGTCTGTGATGCCCCTCTCGTGTCTGTGGATTTCAGGTGCTCAGATGTCTCCTCCACCATCGACTCTTCTTTGACCATGGTAATGGGCGACGATATGGTTAAGGTTGTTGCCTGGTATGACAATGAGTGGGGATATAGCCAAAGGGTGGTTGATTTGGCACATTTGGTGGCTAGCAAGTGGCCAGGCATTGCAGCAGCTCCCGGAGGCGGAGACCCATTGGAAGAATTCTGCCAGGACAACCCTGCTGATGAAGAGTGCAAGGTTTACGAAGCT 1368 51.02 MATHAALSSRVPANTRLPSKSFHSFPTQCSLSKAFLSLLAEFSGLRSTSLPLAQNARERATFFDVVAAQVTPKTAVRSFPCKGETVAKLKVAINGFGRIGRNFLRCWHGRKNSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKPVKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYSHDVANIVSNASCTTNCLAPFVKVMDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGILDVCDAPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGIAAAPGGGDPLEEFCQDNPADEECKVYEA 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1986586 1988582 + Bpe025071 Bpe02g00301 98450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00301 456 Gene3D Dihydrodipicolinate Reductase; domain 2 241 406 - -
Bpe02g00301 456 Gene3D - 90 418 - -
Bpe02g00301 456 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 242 405 - -
Bpe02g00301 456 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 1 456 IPR020831 GO:0016620
Bpe02g00301 456 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 90 191 IPR020828 GO:0051287
Bpe02g00301 456 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 90 416 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bpe02g00301 456 SMART gp_dh_n_7 89 242 IPR020828 GO:0051287
Bpe02g00301 456 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC 1 456 - -
Bpe02g00301 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 360 375 IPR020831 GO:0016620
Bpe02g00301 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 263 279 IPR020831 GO:0016620
Bpe02g00301 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 236 254 IPR020831 GO:0016620
Bpe02g00301 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 198 211 IPR020831 GO:0016620
Bpe02g00301 456 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 319 336 IPR020831 GO:0016620
Bpe02g00301 456 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 258 IPR036291 -
Bpe02g00301 456 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 247 404 IPR020829 GO:0016620
Bpe02g00301 456 Pfam CP12 domain 436 455 - -
Bpe02g00301 456 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 240 247 IPR020830 GO:0016620
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00301 K05298 GAPA; glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) [EC:1.2.1.13] - pvy:116128630 737.643
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00301 Bpe-Chr2:1986586 Bpe14g01342 Bpe-Chr14:10707432 0 dispersed
Bpe02g00301 Bpe-Chr2:1986586 Bpe15g00918 Bpe-Chr15:18982348 9.99E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007528 1 1 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00301 Bpe_Chr02 FPKM 6.064762 6.403386 3.750171 4.038363 30.73176 24.906073 29.661856 0.705384 0.989173 0.900251