Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00304 ATGGCTGAAACTTGGAATGGGTCGAATGAGCTAGGAAGCCAAACAGACGAGAGTAATTATATTGAGAAGATTCACCTTGAGCCTTTGTATGATTCATTTATCTGCCCTTTGACAAAGCAAGTTATGAGGGATCCCGTCACCTTAGAGAATGGGCAGACATTTGAACGGGAAGCCATTGAAAAGTGGTTCAAGCAGTGCAAAAGTGGGAGGAAGATAGTCTGTCCAGTGACCGGAAAAGAATTAAGAAGCACTGATTTGAACCCAAGTATTGCCCTGCGGAACACCATCGAAGAGTGGATTGCGAGGAATGAAGCCGTGCAGCTAGATATGGCTCGCAGATCCTTAAATCTTGGCAGTGCAGAAAATGACATTATGTACTATTTGAAATATGTCCAGGACGTATGTGAAAAAACCCAAGCAAATAAGTATGTTGTACGAGATGCAGGGCTCATACCTATGATTATTGATTTGTTGAAGAGCACCAGTCAAAATGTTCGTTGCAGAACATTAGAAACTCTCCGTATAGTGGTGGAGGGAGATGACGAAAATAAGGAAGTATTGGCTGAAGGCGACACTGTGAGGACAATAGTGAAATTCTTGTCTCGTGATTTTTCTAAGGAGAAGGAGGAGGCTGTCTCTTTGTTGTTTGAGCTCTCTAAATCTAGAGTGCTGTCTGAGAAGATTTGTTCAATAGCTGGAGCAATACTTATTTTAGGTGGAATGACAAACAGCCAATCAGAGAATCTTATAATTGTTGAGAAAGCTGATAGAACATTGGAGAATCTGGAAAAGTGTGAAAATTATGTGCAAGAGTTAGCTCAAAGTGGCAGACTGCAGCCTCTACTCACTCAGATTCTCGAAGGTCCTCCAGAAATCAAAGTCTCCATGGTTGCTTATCTTGGGGAGCAAGTTTTGAATAATGAACAAAAAATCTTTGTGGCTGAAGCTGTGGGGTCGTCTTTGATTAGTATCATAAGAAGCAGTAATATGCAGTCTAGAGAAGCTGCTCTGAAAGCATTAAATCAGATCTCATCTTTCGAGGCGAGTGCAAAAGTGTTGATTGATAAAGGCATACTTCCACCTCTTGTCAAGGGCCTTTTTATGGTCGGATCAAAGCAGCTTCCCATGCGACTGAAGGAAGTTTCAGCAACAATTCTTGCAAATGTTATCAGCTCAGGTAAAGACTTCGATTCAATTCCCGTTGGACCTGATCCACGGACTACTTTGGTCTCGGAAGACATAATCCTTAATCTGCTACATCTGATTAGCAACACTGGTCCAGCAATTGAACGTGAGCTTCTCCAGGTTCTTGTCGGTCTCACTAATTCGCCCTCCACTGTTCTTAATGTTGTTTCTGCCATTAAAAGCTCTGGTGCAACTATCACCTTGATTCAGTTCATTGAGGCCCCACAGGCCGATTTGCGGGTTGCTTCTCTGAAACTCCTGAAAAATATTTCCCCACATATGAGTGAGGAACTGGCGGAATCTTTTCGAGTTGCAGTTGGCCAGCTGAGCAGTCTGTTTAAAATCATATCAGAAAACACTGTAATCACTGAAGAGCAAGCAGCGGCTGTTGGTGTTCTTGCTGACCTCCCTCAAATGGATTTGACCATCACAATGAGAATGCTCGATGAAGGAACCCTCAGGCTGGTTTACTCTAGAGTTGTCGGGATCAGACAAGGGGAGACTAGAGGTGGCCGATATGTGACCCCATTTCTTGCAGCGCTTGTTAGAATTCTTGCAAGAGTTACCTTTTTCTTAGCAGATGAGCCTTCCACCCTTGCATTTTGTCGCGACTACAATCTCGCCGGACTCTTCATTGAACTGCTTCAATCAAATGGAATTGATGACGTACAAATGACTTCAGCCATAGCCTTGGAGGCTTTATCTCTAGAATCTAAAAATTTGACAAAACTTCCCAATTTGCCTCCTCCTGGCTTTTGTGGCACAATATTCAATTGTTTTAGCCAACGGCCGAACTTAACAGGACTGTGCAGAATCCATGGAGGGGCGTGTTCTTTGAAAGAGAGTTTTTGTCTTTTGGAAGGCAAGGCAGTAGAGAAGCTTGTCGCACTTTTAGACCATGCGAATGTGAAGGTCGTGGAAGCAGCTCTTGCTGCAATTTCTACTTTGCTGGATGATGAGGTTAACATTGAACAAGGAGTAGTAGTGTTGTGTCATGCCGATGGGGTTCAACCTATACTTAACATATTGCTTGAGAAAAGGTCAGAGACTCTGAGGAGTAGGGCTGTCTGGACAGTCGAGAGACTTCTTCGAACTGAAGATATTGCATACCAAATTTCTGGAAATCAAATTGTGAATACTGCCCTTGTCGATGCCTTCCATCATGGTGACTATCGAACCCGGCAAATTGCTGAACGTGCTCTAAAGCATGTTGATCGGTTGCCTAATTTCTCCGAAATATTCACCAAAATGGGATAA 2442 43.2 MAETWNGSNELGSQTDESNYIEKIHLEPLYDSFICPLTKQVMRDPVTLENGQTFEREAIEKWFKQCKSGRKIVCPVTGKELRSTDLNPSIALRNTIEEWIARNEAVQLDMARRSLNLGSAENDIMYYLKYVQDVCEKTQANKYVVRDAGLIPMIIDLLKSTSQNVRCRTLETLRIVVEGDDENKEVLAEGDTVRTIVKFLSRDFSKEKEEAVSLLFELSKSRVLSEKICSIAGAILILGGMTNSQSENLIIVEKADRTLENLEKCENYVQELAQSGRLQPLLTQILEGPPEIKVSMVAYLGEQVLNNEQKIFVAEAVGSSLISIIRSSNMQSREAALKALNQISSFEASAKVLIDKGILPPLVKGLFMVGSKQLPMRLKEVSATILANVISSGKDFDSIPVGPDPRTTLVSEDIILNLLHLISNTGPAIERELLQVLVGLTNSPSTVLNVVSAIKSSGATITLIQFIEAPQADLRVASLKLLKNISPHMSEELAESFRVAVGQLSSLFKIISENTVITEEQAAAVGVLADLPQMDLTITMRMLDEGTLRLVYSRVVGIRQGETRGGRYVTPFLAALVRILARVTFFLADEPSTLAFCRDYNLAGLFIELLQSNGIDDVQMTSAIALEALSLESKNLTKLPNLPPPGFCGTIFNCFSQRPNLTGLCRIHGGACSLKESFCLLEGKAVEKLVALLDHANVKVVEAALAAISTLLDDEVNIEQGVVVLCHADGVQPILNILLEKRSETLRSRAVWTVERLLRTEDIAYQISGNQIVNTALVDAFHHGDYRTRQIAERALKHVDRLPNFSEIFTKMG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2003848 2007133 - Bpe008146.2 Bpe02g00304 98453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00304 813 SMART Ubox_2 32 99 IPR003613 GO:0004842|GO:0016567
Bpe02g00304 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 810 - -
Bpe02g00304 813 Gene3D - 573 808 IPR011989 -
Bpe02g00304 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 810 - -
Bpe02g00304 813 ProSiteProfiles U-box domain profile. 28 106 IPR003613 GO:0004842|GO:0016567
Bpe02g00304 813 SMART arm_5 672 713 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 306 345 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 717 759 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 346 391 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 138 178 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 180 220 IPR000225 GO:0005515
Bpe02g00304 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 110 IPR013083 -
Bpe02g00304 813 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Bpe02g00304 813 SUPERFAMILY ARM repeat 121 444 IPR016024 -
Bpe02g00304 813 SUPERFAMILY ARM repeat 417 803 IPR016024 -
Bpe02g00304 813 Gene3D - 111 262 IPR011989 -
Bpe02g00304 813 CDD RING-Ubox_PUB 33 79 IPR045210 -
Bpe02g00304 813 SUPERFAMILY RING/U-box 23 109 - -
Bpe02g00304 813 Gene3D - 282 486 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00304 Bpe02g01758 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00304 Bpe-Chr2:2003848 Bpe02g01758 Bpe-Chr2:19917990 0 dispersed
Bpe01g00086 Bpe-Chr1:546082 Bpe02g00304 Bpe-Chr2:2003848 3.00E-99 transposed
Bpe08g01239 Bpe-Chr8:13925349 Bpe02g00304 Bpe-Chr2:2003848 1.00E-14 transposed
Bpe14g00931 Bpe-Chr14:6938643 Bpe02g00304 Bpe-Chr2:2003848 1.49E-71 transposed
Bpe14g01220 Bpe-Chr14:9124844 Bpe02g00304 Bpe-Chr2:2003848 1.69E-38 transposed
Bpe15g01394 Bpe-Chr15:21838377 Bpe02g00304 Bpe-Chr2:2003848 5.39E-37 transposed
Bpe02g00304 Bpe-Chr2:2003848 Bpe02g01755 Bpe-Chr2:19899061 5.27E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00304 - - pop:7496852 1162.52