Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00304 ATGGCTGAAACTTGGAATGGGTCGAATGAGCTAGGAAGCCAAACAGACGAGAGTAATTATATTGAGAAGATTCACCTTGAGCCTTTGTATGATTCATTTATCTGCCCTTTGACAAAGCAAGTTATGAGGGATCCCGTCACCTTAGAGAATGGGCAGACATTTGAACGGGAAGCCATTGAAAAGTGGTTCAAGCAGTGCAAAAGTGGGAGGAAGATAGTCTGTCCAGTGACCGGAAAAGAATTAAGAAGCACTGATTTGAACCCAAGTATTGCCCTGCGGAACACCATCGAAGAGTGGATTGCGAGGAATGAAGCCGTGCAGCTAGATATGGCTCGCAGATCCTTAAATCTTGGCAGTGCAGAAAATGACATTATGTACTATTTGAAATATGTCCAGGACGTATGTGAAAAAACCCAAGCAAATAAGTATGTTGTACGAGATGCAGGGCTCATACCTATGATTATTGATTTGTTGAAGAGCACCAGTCAAAATGTTCGTTGCAGAACATTAGAAACTCTCCGTATAGTGGTGGAGGGAGATGACGAAAATAAGGAAGTATTGGCTGAAGGCGACACTGTGAGGACAATAGTGAAATTCTTGTCTCGTGATTTTTCTAAGGAGAAGGAGGAGGCTGTCTCTTTGTTGTTTGAGCTCTCTAAATCTAGAGTGCTGTCTGAGAAGATTTGTTCAATAGCTGGAGCAATACTTATTTTAGGTGGAATGACAAACAGCCAATCAGAGAATCTTATAATTGTTGAGAAAGCTGATAGAACATTGGAGAATCTGGAAAAGTGTGAAAATTATGTGCAAGAGTTAGCTCAAAGTGGCAGACTGCAGCCTCTACTCACTCAGATTCTCGAAGGTCCTCCAGAAATCAAAGTCTCCATGGTTGCTTATCTTGGGGAGCAAGTTTTGAATAATGAACAAAAAATCTTTGTGGCTGAAGCTGTGGGGTCGTCTTTGATTAGTATCATAAGAAGCAGTAATATGCAGTCTAGAGAAGCTGCTCTGAAAGCATTAAATCAGATCTCATCTTTCGAGGCGAGTGCAAAAGTGTTGATTGATAAAGGCATACTTCCACCTCTTGTCAAGGGCCTTTTTATGGTCGGATCAAAGCAGCTTCCCATGCGACTGAAGGAAGTTTCAGCAACAATTCTTGCAAATGTTATCAGCTCAGGTAAAGACTTCGATTCAATTCCCGTTGGACCTGATCCACGGACTACTTTGGTCTCGGAAGACATAATCCTTAATCTGCTACATCTGATTAGCAACACTGGTCCAGCAATTGAACGTGAGCTTCTCCAGGTTCTTGTCGGTCTCACTAATTCGCCCTCCACTGTTCTTAATGTTGTTTCTGCCATTAAAAGCTCTGGTGCAACTATCACCTTGATTCAGTTCATTGAGGCCCCACAGGCCGATTTGCGGGTTGCTTCTCTGAAACTCCTGAAAAATATTTCCCCACATATGAGTGAGGAACTGGCGGAATCTTTTCGAGTTGCAGTTGGCCAGCTGAGCAGTCTGTTTAAAATCATATCAGAAAACACTGTAATCACTGAAGAGCAAGCAGCGGCTGTTGGTGTTCTTGCTGACCTCCCTCAAATGGATTTGACCATCACAATGAGAATGCTCGATGAAGGAACCCTCAGGCTGGTTTACTCTAGAGTTGTCGGGATCAGACAAGGGGAGACTAGAGGTGGCCGATATGTGACCCCATTTCTTGCAGCGCTTGTTAGAATTCTTGCAAGAGTTACCTTTTTCTTAGCAGATGAGCCTTCCACCCTTGCATTTTGTCGCGACTACAATCTCGCCGGACTCTTCATTGAACTGCTTCAATCAAATGGAATTGATGACGTACAAATGACTTCAGCCATAGCCTTGGAGGCTTTATCTCTAGAATCTAAAAATTTGACAAAACTTCCCAATTTGCCTCCTCCTGGCTTTTGTGGCACAATATTCAATTGTTTTAGCCAACGGCCGAACTTAACAGGACTGTGCAGAATCCATGGAGGGGCGTGTTCTTTGAAAGAGAGTTTTTGTCTTTTGGAAGGCAAGGCAGTAGAGAAGCTTGTCGCACTTTTAGACCATGCGAATGTGAAGGTCGTGGAAGCAGCTCTTGCTGCAATTTCTACTTTGCTGGATGATGAGGTTAACATTGAACAAGGAGTAGTAGTGTTGTGTCATGCCGATGGGGTTCAACCTATACTTAACATATTGCTTGAGAAAAGGTCAGAGACTCTGAGGAGTAGGGCTGTCTGGACAGTCGAGAGACTTCTTCGAACTGAAGATATTGCATACCAAATTTCTGGAAATCAAATTGTGAATACTGCCCTTGTCGATGCCTTCCATCATGGTGACTATCGAACCCGGCAAATTGCTGAACGTGCTCTAAAGCATGTTGATCGGTTGCCTAATTTCTCCGAAATATTCACCAAAATGGGATAA 2442 43.2 MAETWNGSNELGSQTDESNYIEKIHLEPLYDSFICPLTKQVMRDPVTLENGQTFEREAIEKWFKQCKSGRKIVCPVTGKELRSTDLNPSIALRNTIEEWIARNEAVQLDMARRSLNLGSAENDIMYYLKYVQDVCEKTQANKYVVRDAGLIPMIIDLLKSTSQNVRCRTLETLRIVVEGDDENKEVLAEGDTVRTIVKFLSRDFSKEKEEAVSLLFELSKSRVLSEKICSIAGAILILGGMTNSQSENLIIVEKADRTLENLEKCENYVQELAQSGRLQPLLTQILEGPPEIKVSMVAYLGEQVLNNEQKIFVAEAVGSSLISIIRSSNMQSREAALKALNQISSFEASAKVLIDKGILPPLVKGLFMVGSKQLPMRLKEVSATILANVISSGKDFDSIPVGPDPRTTLVSEDIILNLLHLISNTGPAIERELLQVLVGLTNSPSTVLNVVSAIKSSGATITLIQFIEAPQADLRVASLKLLKNISPHMSEELAESFRVAVGQLSSLFKIISENTVITEEQAAAVGVLADLPQMDLTITMRMLDEGTLRLVYSRVVGIRQGETRGGRYVTPFLAALVRILARVTFFLADEPSTLAFCRDYNLAGLFIELLQSNGIDDVQMTSAIALEALSLESKNLTKLPNLPPPGFCGTIFNCFSQRPNLTGLCRIHGGACSLKESFCLLEGKAVEKLVALLDHANVKVVEAALAAISTLLDDEVNIEQGVVVLCHADGVQPILNILLEKRSETLRSRAVWTVERLLRTEDIAYQISGNQIVNTALVDAFHHGDYRTRQIAERALKHVDRLPNFSEIFTKMG 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2003848 2007133 - Bpe008146.2 Bpe02g00304 98453

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00304 813 SMART Ubox_2 32 99 IPR003613 GO:0004842|GO:0016567
Bpe02g00304 813 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 810 - -
Bpe02g00304 813 Gene3D - 573 808 IPR011989 -
Bpe02g00304 813 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 43 1 810 - -
Bpe02g00304 813 ProSiteProfiles U-box domain profile. 28 106 IPR003613 GO:0004842|GO:0016567
Bpe02g00304 813 SMART arm_5 672 713 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 306 345 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 717 759 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 346 391 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 138 178 IPR000225 GO:0005515
Bpe02g00304 813 SMART arm_5 180 220 IPR000225 GO:0005515
Bpe02g00304 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 110 IPR013083 -
Bpe02g00304 813 Pfam U-box domain 31 104 IPR003613 GO:0004842|GO:0016567
Bpe02g00304 813 SUPERFAMILY ARM repeat 121 444 IPR016024 -
Bpe02g00304 813 SUPERFAMILY ARM repeat 417 803 IPR016024 -
Bpe02g00304 813 Gene3D - 111 262 IPR011989 -
Bpe02g00304 813 CDD RING-Ubox_PUB 33 79 IPR045210 -
Bpe02g00304 813 SUPERFAMILY RING/U-box 23 109 - -
Bpe02g00304 813 Gene3D - 282 486 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00304 - - - pop:7496852 1162.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00304 Bpe02g01758 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00304 Bpe-Chr2:2003848 Bpe02g01758 Bpe-Chr2:19917990 0 dispersed
Bpe01g00086 Bpe-Chr1:546082 Bpe02g00304 Bpe-Chr2:2003848 3.00E-99 transposed
Bpe08g01239 Bpe-Chr8:13925349 Bpe02g00304 Bpe-Chr2:2003848 1.00E-14 transposed
Bpe14g00931 Bpe-Chr14:6938643 Bpe02g00304 Bpe-Chr2:2003848 1.49E-71 transposed
Bpe14g01220 Bpe-Chr14:9124844 Bpe02g00304 Bpe-Chr2:2003848 1.69E-38 transposed
Bpe15g01394 Bpe-Chr15:21838377 Bpe02g00304 Bpe-Chr2:2003848 5.39E-37 transposed
Bpe02g00304 Bpe-Chr2:2003848 Bpe02g01755 Bpe-Chr2:19899061 5.27E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g75 Blo01g01639 . . . Bpe02g00304 . . Bma01g02413 Cmo05g00990 . . . . . . . . Bhi04g01222 . . . . . . Cla08g00936 Cam08g1383 Cec08g0964 Cco08g1083 Clacu08g1090 . Cre08g0873 . . Cone17ag1462 . . . . Cme03g01335 . Blo18g00742 Bda11g00977 Bda01g01564 Bpe02g01758 . Bma01g00699 . . . . . Cma05g00970 Car05g00854 . Cpe11g00782 . . . . . . . . . . . . . . . Lsi08g00778 . Chy03g00609 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
Bpe14g00159 . 1 1046 U-box Gene Family AT5G15400 73.3 0.0e+00 1511.9
Bpe06g00419 . 1 781 U-box Gene Family AT3G54790 52.5 2.2e-129 459.9
Bpe06g00004 BCT 195 823 U-box Gene Family AT2G23140 61.5 1.6e-104 377.1
Bpe15g00315 BCT 192 739 U-box Gene Family AT2G23140 52.3 3.0e-66 250.0
Bpe13g01504 . 1 756 U-box Gene Family AT1G24330 58.0 1.5e-237 819.3
Bpe10g00785 . 1 769 U-box Gene Family AT1G24330 54.5 8.7e-214 740.3
Bpe13g01504 . 1 758 U-box Gene Family AT1G67530 57.1 1.2e-231 799.7
Bpe10g00785 . 1 768 U-box Gene Family AT1G67530 54.1 1.8e-206 716.1
Bpe01g00378 . 1 365 U-box Gene Family AT4G21350 59.5 3.7e-117 418.3
Bpe02g01924 . 1 360 U-box Gene Family AT4G21350 61.3 5.9e-115 411.0
Bpe09g00300 . 134 457 U-box Gene Family AT3G07360 52.6 1.6e-84 309.7
Bpe06g00548 . 134 457 U-box Gene Family AT3G07360 61.2 5.2e-83 304.7
Bpe10g00477 . 134 457 U-box Gene Family AT3G07360 54.9 5.5e-77 284.6
Bpe11g01609 CCT 240 464 U-box Gene Family AT1G71020 55.8 5.7e-62 235.3
Bpe11g00764 CCT 254 421 U-box Gene Family AT1G71020 56.6 7.5e-46 181.8
Bpe08g01367 CCT 227 419 U-box Gene Family AT1G71020 50.5 8.3e-45 178.3
Bpe11g01609 CCT 1 668 U-box Gene Family AT1G23030 54.4 4.8e-106 382.1
Bpe11g00764 CCT 89 632 U-box Gene Family AT2G28830 58.3 8.1e-103 371.3
Bpe08g01367 CCT 89 629 U-box Gene Family AT2G28830 57.2 7.1e-99 358.2
Bpe11g00764 CCT 1 630 U-box Gene Family AT3G46510 68.1 4.9e-157 551.6
Bpe08g01367 CCT 1 629 U-box Gene Family AT3G46510 64.2 2.0e-142 503.1
Bpe11g00764 CCT 8 621 U-box Gene Family AT3G54850 54.5 4.6e-104 375.6
Bpe02g01755 . 34 643 U-box Gene Family AT5G42340 66.1 1.9e-140 496.5
Bpe11g01122 . 1 714 U-box Gene Family AT1G29340 64.4 2.6e-228 788.5
Bpe04g01488 . 1 393 U-box Gene Family AT3G52450 56.7 6.0e-127 451.1
Bpe03g01192 . 1 393 U-box Gene Family AT3G52450 53.4 1.6e-119 426.4
Bpe04g01488 . 1 392 U-box Gene Family AT2G35930 55.8 5.0e-123 438.0
Bpe03g01192 . 1 392 U-box Gene Family AT2G35930 53.5 3.3e-119 425.2
Bpe06g00274 . 1 396 U-box Gene Family AT5G64660 50.6 1.1e-104 377.1
Bpe15g00290 . 1 448 U-box Gene Family AT3G49810 71.7 1.1e-179 626.3
Bpe13g00136 . 1 450 U-box Gene Family AT3G49810 70.1 1.9e-176 615.5
Bpe05g00017 . 1 450 U-box Gene Family AT3G49810 61.1 4.0e-150 528.1
Bpe15g00290 . 1 448 U-box Gene Family AT5G65920 67.8 3.5e-167 584.7
Bpe13g00136 . 1 450 U-box Gene Family AT5G65920 66.5 3.1e-163 571.6
Bpe05g00017 . 1 450 U-box Gene Family AT5G65920 61.6 1.5e-149 526.2
Bpe13g00949 . 30 876 U-box Gene Family AT2G45910 52.8 1.3e-234 809.7
Bpe02g01207 . 466 748 U-box Gene Family AT2G45910 50.2 4.6e-75 279.6
Bpe13g00261 . 28 503 U-box Gene Family AT5G40140 50.3 1.6e-60 230.7
Bpe13g01362 . 310 907 U-box Gene Family AT1G68940 54.2 5.5e-174 608.6
Bpe02g01758 CCT 4 813 U-box Gene Family AT1G76390 63.3 2.2e-276 948.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G76390 60.4 1.9e-267 918.7
Bpe02g01758 CCT 7 813 U-box Gene Family AT1G20780 64.1 1.7e-284 975.3
Bpe02g00304 CCT 12 813 U-box Gene Family AT1G20780 60.2 1.3e-268 922.5
Bpe13g01504 . 1 758 U-box Gene Family AT1G27910 59.5 4.1e-248 854.4
Bpe10g00785 . 1 771 U-box Gene Family AT1G27910 57.5 1.8e-235 812.4
Bpe10g00007 . 1 598 U-box Gene Family AT5G67530 75.0 1.8e-262 901.7
Bpe13g00911 . 16 164 U-box Gene Family AT5G67530 52.9 1.1e-43 174.9
Bpe13g00538 CCT 1 523 U-box Gene Family AT1G04510 73.3 3.7e-224 774.2
Bpe14g01276 CCT 2 521 U-box Gene Family AT1G04510 72.4 4.5e-222 767.3
Bpe13g00538 CCT 1 487 U-box Gene Family AT2G33340 73.1 9.7e-211 729.6
Bpe14g01276 CCT 2 485 U-box Gene Family AT2G33340 72.7 4.5e-208 720.7
Bpe03g00897 . 10 279 U-box Gene Family AT3G07370 66.3 9.2e-105 376.7
Bpe09g00301 . 7 277 U-box Gene Family AT3G07370 59.8 2.3e-92 335.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006312 2 1 2 2 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 0 2 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00304 Bpe_Chr02 FPKM 9.302093 10.594506 9.597266 9.881206 13.436199 12.953721 13.143953 8.402618 7.338811 9.654131