Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00311 ATGGGAGAAAAGAAAGAGAAGAACTTCCTCACAGTAGCACCCTTTGAGTGTGCTTGGCTGAAGGATTTGAGATGCAGAGAAGCGGGTCGGGTTTGTGTGGCTTTCGAAGCTTTTGCTCACAATGATGTCGCAGTGGTATTCAGGGAGAATGTGGGAAGTCAGCATTACCATTACAAAAGAGACTGCAGTCCTCGCTATACCGTTATATTGGGTAGCCAGAGAAATCGCCGTCTGAAGATTGAGGTGAATGGGCAAACCGTTGTTGATGTGGAGGGTGTTGGACTTTGTTGTTCTTCTCCATTCCAGAGCTATTGGATTTGCATCTACGATGGTCTGATGCAGATTTCAGAATCACAACTCTGTTGCTTGAGAGATCTTGGTCTACAATTTGAAGTGGTGTCACTGGTGAAGCAGCGTGAGGATACTATTGAAAGATTAAAATTGCTGTCAGACTTAAGTAAGAATGTGGAAGCATCGTATCTAAGAGCTCAGCCCCATTGCAATTTCGTCGCCCCCTGTGGACTTCAGCTCAAACAGCTGCTCTTAACTGGCAAGTTCAGTGACGTAGGTATACATATATGTGATGTTGAATTTGTTGCTCACGCCCATAAAGTCATTCTTAGTTTATGGAGTGTGCCATTTGCAAAGATGTTCACTAATGGAATGAGCGAAACAATAACGTCTAAGATCTCTTTAGTGGATTATTCTAGTAGAAGAAGGTCACACACCATGATTTTTTCTATTATTCAACGTAAAATGGATGAAGAAGCAGCAGAAAATTTTTCCAAAGTAATTCAACTCTTGCTTATAAAGCCCACTATGTGGCAGGTTAGACCTATGCCTCATAAGGCTACGCAGATGTCTGTTTCTCTGTACTGTGTTTTGAAGATTGATTTGTTTATCAAATGGCTATTAAGAGCTAGACCTAAGAAACTTGGGTTAGGCACGGCCTATGTCCATGGTTTGAAGCATGCAACTGGAAATTTTATTGTAATTATGGATGCTGATCTATCGCACCATCCAAAGTACTTACCAAGTTTCATCGAGAAGCAATTACTGACCAACGCAAGTATAGTTACCGGAACCCGATACGTGAAAGGTGGAGGCGTACATGGATGGAATCTTATGCGCAAACTTACAAGTAGGGGGGCTAATGTTCTGGCACAAACATTTCTCTGGCCTGGTGTGTCAGATTTGACTGGATCGTTTAGACTCTATAGAAAATCAGCCCTCGAAGACATTATTAGCTCTGTCGTGAGTAAGGGGTATGTTTTTCAAATGGAGATGATTGTTCGAGCTTCCAGAAAAGGATACCATATTGAAGAGGTTCCAATAACTTTTGTGGACAGAGTTTACGGAAGTTCTAAGCTTGGAGGATCAGAAATTGTAGAGTATTTGAAAGGCCTTGTATATCTCCTGCTCACCACATAA 1431 41.86 MGEKKEKNFLTVAPFECAWLKDLRCREAGRVCVAFEAFAHNDVAVVFRENVGSQHYHYKRDCSPRYTVILGSQRNRRLKIEVNGQTVVDVEGVGLCCSSPFQSYWICIYDGLMQISESQLCCLRDLGLQFEVVSLVKQREDTIERLKLLSDLSKNVEASYLRAQPHCNFVAPCGLQLKQLLLTGKFSDVGIHICDVEFVAHAHKVILSLWSVPFAKMFTNGMSETITSKISLVDYSSRRRSHTMIFSIIQRKMDEEAAENFSKVIQLLLIKPTMWQVRPMPHKATQMSVSLYCVLKIDLFIKWLLRARPKKLGLGTAYVHGLKHATGNFIVIMDADLSHHPKYLPSFIEKQLLTNASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYRKSALEDIISSVVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVYGSSKLGGSEIVEYLKGLVYLLLTT 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2046511 2055631 + Bpe008153.1 Bpe02g00311 98460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00311 476 Pfam Glycosyl transferase family 2 306 414 IPR001173 -
Bpe02g00311 476 CDD BTB_POZ_ZBTB_KLHL-like 186 237 - -
Bpe02g00311 476 Gene3D Potassium Channel Kv1.1; Chain A 163 269 IPR011333 -
Bpe02g00311 476 PANTHER DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 302 476 IPR039528 GO:0004582
Bpe02g00311 476 SUPERFAMILY POZ domain 176 237 IPR011333 -
Bpe02g00311 476 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 295 474 IPR029044 -
Bpe02g00311 476 Pfam Farnesoic acid 0-methyl transferase 53 116 IPR022041 -
Bpe02g00311 476 Pfam BTB/POZ domain 177 236 IPR000210 GO:0005515
Bpe02g00311 476 SUPERFAMILY Nucleotide-diphospho-sugar transferases 308 459 IPR029044 -
Bpe02g00311 476 CDD DPM1_like 304 472 IPR039528 GO:0004582
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00311 K00721 DPM1; dolichol-phosphate mannosyltransferase [EC:2.4.1.83] - oeu:111398620 326.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00311 Bpe04g00279 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00311 Bpe-Chr2:2046511 Bpe04g00279 Bpe-Chr4:1791905 8.92E-52 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008872 1 2 2 1 1 0 2 0 0 1 0 0 0 1 1 3 0 2 2 0 1 2 1 1 1 1 1 2 3 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20861 PF00535 Glycos_transf_2 1.20E-17 CL0110 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00311 Bpe_Chr02 FPKM 22.169289 21.110355 27.770782 26.997625 29.821819 30.112072 29.402821 22.099216 21.127724 22.262064