Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00316 ATGCGTGCTTCCTTTTTTTTCTTGGAAAGAAATCTAGGTCCTTTTAGTTTATATGCAGGTCACGAATTTTTTAAATATGGAGTGGAATCAACAAGAAGGTCTATGCAGATGCAAATTGTTGAAGCACTTAGCTTGGGTGAGAAAAGCAGAGCTTCCAATTTACTTTTGGATCTTGGCCAAGGAAATTGTTCTTCAACTGCCAGCGATTTCTTATATGTTCTCAGATATTGTGCAGCAGCACCCGATCCAGTGTTTGTAATGGAGACTTGGAGGATAATGAAAGAAAAAAAGATTTGGCTGGATAACAGGTGCTCCTTGCTCATGATAAAAGCACTTTGCGAAGGGGGTTGTTTTGACGAGGCATTGGGGTTGATTAATTTTCTCAGAGAAAGCCATGGGAACTATTCTATTCTTACATTGTACAATTTTTTTCTAAGAGCCTGTACTAAATTGCAAAGTCCAAATCATACCAATCAATGTTTGGGTCTGATGGAGCAGAACATGGTGGGGAAAAATGAAGCGACGTACCTAGAGCTTCTGAAGGTTGCGGTTTGGCAGCAAAACCTATCTGCAGTCCATCACATCTGGAAGGACTATATGAAAAATTACAGTCTGAACATTTTACCTATGCGGAAATTTATTCGGTCTTTTGCAAGGTTGGGAGATTTAAATTCTGCATATGAAAAATTGCAACAGATGGTAGCTTTGGCCATTCGGGGAAGTACCTATGTTCATAAAACAGCAAAAGGGAAGCTTTATTCGACAAGAATAGATATTCCTATACCTTTAAGAAGTGATTTTCACTCCAAGTTAGATTTCAATGAGAGCATTTATTCTGCTCCTGCCTCATCAAGTGAGAAACCAGGTGCTCTTGCTAGTGACATAGTCCTATCGAACATTTCTGGCTTGACAGACAGAGGGAATGTGAATGGTGGAGTAGGTTATATGAATAGGTGTAACAAAAGTAGTGCTATGAAGCTTTTAAGGTGGTCTTTCAGTGATGTGATACATGCATCTGCACATGGGAAAAACTGTGGTCTAGCAAAGCAGTTATTACTACAGATGGAAAATCTTGGCCTGCAACCTTCAAGTCATACGTATCATGGTATTCTTAAAGCAGTTATTTCAGAGGGCAGTTTCAGTGACGGAATTGATGTGCTGAAAATAATGCAACAGAGGAACTTGAAGCCATATCATTCAACTCTTGCAACTCTTTCAATTTGTTGCAGCGAAGTTCTTGAGTTAGATTTGGCTGAAGCTTTACTGGAACAAGTTTCTCATTGTCCATATCCACATCCTTTTAACAAATTTCTTGCCGCATGTGACATTATGGACCAACCAGAACGTGCTATCCAGATATTGACCAAAATGAAACGGTTGAAAGTTCAGCCAGATATCAGGACATATGAGCTCTTGTTTTCACTATTTGGTAATGTGAATGTACCTTATGAGAGGGCGGATTTGTTATCACAGGCAAATTCCTCCAAAAGAATAAGTGCAATAGAGATGTACATGGCGAGGAATGGAGTTCAGCATAGTCATTTATCTATGAAGAACTTGTTAAAAGCTGTTGGACGTGAGGGGATGATAAGAAAGCTGCTTCAGTATTTGCATGTAGCCGAGGACCTTTTCTGTCGTAATAATACTTATTTGGGAATACCTATTTATAACATAGTGTTGCATTCCTTAGTTAAAGCAAATGAATTTGTTCTAAATAATATTTCACACGACATGCAGAGTGACAAGGCTCTAGAGATCTTTGAAGATTTGATATTTAGTGGTTCCCTCCCGGACACAACAACTTATAATATAATGATAGATTGTTGTAGCATTATACAATGCTTTAAATCTGCATGTGCACTGCTTTCCATAATGCTTCGCAAAGGATTTTGTCCAGAAACATCAACTTACACTAGTTTACTAAAGATTGTGTTGAATGAGGACAATTTTAAGGAAGCATTTAATATCATGGATCAAGCTTGTTCCGAAGAGAGAGAACTTGATGTTATATTGTTTAATACTATCCTGAAGAAAGCTGCTGAAAAGGGGAGGATTGATATAATTGAGATCATCGTGGAAAAAATGCACCGTTGTAATGTACAGCCTGACACGTCAACATGCTCTTCTGTTTTCTCGGCATACATGGAGCATGGTTTTCACAACACTGCTGTTGAAGCATTACAAGTTTTGAGCATGCGAATGCTACGTACAGAAGATGGGATTATTCCAGATATTACGGATTTCGATGATATAATTTTTGACGAAGATTCTGAATCAGAGAGAGAGGTTGTGAATATTTTTAACGATGGAGGTGAGAATCTTGCTGCGGCTCTTTTAAATTTAAGGTGGTCAGCAATGCTTGGATTCTCAGTTTCACAGGACCCAAATGAAAGTCCTTGGTCAAAAAGACTCTCCCAATCATTTGACATCGAAGGACATTCAACTTCAGAGAATTTATAA 2460 38.37 MRASFFFLERNLGPFSLYAGHEFFKYGVESTRRSMQMQIVEALSLGEKSRASNLLLDLGQGNCSSTASDFLYVLRYCAAAPDPVFVMETWRIMKEKKIWLDNRCSLLMIKALCEGGCFDEALGLINFLRESHGNYSILTLYNFFLRACTKLQSPNHTNQCLGLMEQNMVGKNEATYLELLKVAVWQQNLSAVHHIWKDYMKNYSLNILPMRKFIRSFARLGDLNSAYEKLQQMVALAIRGSTYVHKTAKGKLYSTRIDIPIPLRSDFHSKLDFNESIYSAPASSSEKPGALASDIVLSNISGLTDRGNVNGGVGYMNRCNKSSAMKLLRWSFSDVIHASAHGKNCGLAKQLLLQMENLGLQPSSHTYHGILKAVISEGSFSDGIDVLKIMQQRNLKPYHSTLATLSICCSEVLELDLAEALLEQVSHCPYPHPFNKFLAACDIMDQPERAIQILTKMKRLKVQPDIRTYELLFSLFGNVNVPYERADLLSQANSSKRISAIEMYMARNGVQHSHLSMKNLLKAVGREGMIRKLLQYLHVAEDLFCRNNTYLGIPIYNIVLHSLVKANEFVLNNISHDMQSDKALEIFEDLIFSGSLPDTTTYNIMIDCCSIIQCFKSACALLSIMLRKGFCPETSTYTSLLKIVLNEDNFKEAFNIMDQACSEERELDVILFNTILKKAAEKGRIDIIEIIVEKMHRCNVQPDTSTCSSVFSAYMEHGFHNTAVEALQVLSMRMLRTEDGIIPDITDFDDIIFDEDSESEREVVNIFNDGGENLAAALLNLRWSAMLGFSVSQDPNESPWSKRLSQSFDIEGHSTSENL 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2070789 2076841 + Bpe008157.1 Bpe02g00316 98465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00316 819 Pfam Pentatricopeptide repeat domain 434 478 IPR002885 -
Bpe02g00316 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Bpe02g00316 819 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 809 - -
Bpe02g00316 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 668 702 IPR002885 -
Bpe02g00316 819 Gene3D Tetratricopeptide repeat domain 297 429 IPR011990 GO:0005515
Bpe02g00316 819 Gene3D Tetratricopeptide repeat domain 31 204 IPR011990 GO:0005515
Bpe02g00316 819 Gene3D Tetratricopeptide repeat domain 430 561 IPR011990 GO:0005515
Bpe02g00316 819 Gene3D Tetratricopeptide repeat domain 565 742 IPR011990 GO:0005515
Bpe02g00316 819 TIGRFAM PPR: pentatricopeptide repeat domain 601 632 IPR002885 -
Bpe02g00316 819 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Bpe02g00316 819 Pfam PPR repeat 601 630 IPR002885 -
Bpe02g00316 819 Pfam PPR repeat 108 130 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00316 - - - qlo:115974617 941.414
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00316 Bpe-Chr2:2070789 Bpe10g00045 Bpe-Chr10:653997 9.41E-06 dispersed
Bpe02g00316 Bpe-Chr2:2070789 Bpe05g00177 Bpe-Chr5:6702620 8.86E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g114 Blo01g01626 . . . Bpe02g00316 . . Bma01g02401 . . . . . . . Cpe06g00028 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00963 . . . . . . . Cmo09g00062 . . . Car09g00053 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005329 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00316 Bpe_Chr02 FPKM 2.22549 2.181574 0.307291 0.284488 9.059061 9.556543 10.744797 0.147386 0.23347 0.124712