Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00324 ATGGAGAAATCTGACAGCAACCCTAGGAAAGTTGGGCCTCGGCTTTGCTGTCTTTGTAGTCAGAAGAGAGCTGCTCTCAAGAGGCCAAAAACTCTGCAACAGATTTGCAGGGAGTGTTTCTTCGAGGTGTTGGAAGATGAGATTCATCAGGTGATTATGGAGAACCATTTGTTTAAGCCCGGCGAGCGCATTGCTATTGGTGCATCTGGAGGCAAAGATTCTACGGTTCTTGCTTATATATTATCTGAATTGAATCGACGTCACAATTATGGGTTGGACCTCTTCCTCTTATCAGTGGATGAGGGCATTACAGGGTACAGGGATGACTCTCTTGAAACTGTGAAAAGAAATGAAATTCAGTATGGACTGCCTTTGAAAATCTTATCATATAAGGATCTGTATGGATGGACAATGGATGAAATAGTGAAGGTGATCGGTTTAAAGAATAATTGCACTTTCTGTGGGGTTTTTCGTCGCCAGGCCCTTGATAGAGGTGCTGCATTGTTGAAAGTAGACAAGCTCGCAACTGGACATAATGCAGATGACATTGCTGAAACAGTTCTCTTAAACATCTTAAGAGGTGATATCGCTAGATTAAGTAGATGCACTGCAATAGTGACTGGTGAAGATGGACCAATTCCAAGATGCAAGCCCTTTAAGTACACATATGAAAAGGAGATCGTTATATATCCTTATTATGAATCCCTTGATTGTTATCTCATAAAACATATACTCGATGCAGGCATTTATTCCCCGAATGCATATCGTGGTTTTGCTCGAGAATTCATCAAGGACTTGGAAAGAATCAGACCTATGGCTATACTTGACATCATTCGATCAGGGGAAAATTTTAGAATTTCCACTTCTACAAAAATGCCTGAGCAGGGTACCTGTGAACGATGTGGCTACATTTCAAGCCAGAAATGGTGCAAAGCTTGTGTTTTGCTTGAGGGACTCAATCGAGGCTTGCCAAAGTTGGGCATTGGGCGTAGTCGAGGTCTTAATGAGGATCGGAAGAACGAAAGTAAAGAAAATGTTGAAGGGAGAAGAATAGGAAGCAAACCATGCGGAACATTGGACTTCTGA 1086 41.99 MEKSDSNPRKVGPRLCCLCSQKRAALKRPKTLQQICRECFFEVLEDEIHQVIMENHLFKPGERIAIGASGGKDSTVLAYILSELNRRHNYGLDLFLLSVDEGITGYRDDSLETVKRNEIQYGLPLKILSYKDLYGWTMDEIVKVIGLKNNCTFCGVFRRQALDRGAALLKVDKLATGHNADDIAETVLLNILRGDIARLSRCTAIVTGEDGPIPRCKPFKYTYEKEIVIYPYYESLDCYLIKHILDAGIYSPNAYRGFAREFIKDLERIRPMAILDIIRSGENFRISTSTKMPEQGTCERCGYISSQKWCKACVLLEGLNRGLPKLGIGRSRGLNEDRKNESKENVEGRRIGSKPCGTLDF 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2106622 2109526 + Bpe008165.1 Bpe02g00324 98473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00324 361 MobiDBLite consensus disorder prediction 333 350 - -
Bpe02g00324 361 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 14 331 IPR000541 GO:0000049|GO:0002098|GO:0034227
Bpe02g00324 361 Pfam Zinc-ribbon 296 326 IPR032442 -
Bpe02g00324 361 MobiDBLite consensus disorder prediction 333 361 - -
Bpe02g00324 361 CDD Alpha_ANH_like_II 63 254 - -
Bpe02g00324 361 Pfam PP-loop family 64 227 IPR011063 -
Bpe02g00324 361 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 15 344 IPR000541 GO:0000049|GO:0002098|GO:0034227
Bpe02g00324 361 PIRSF ATPase_YdaO 13 328 IPR035107 GO:0008033
Bpe02g00324 361 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 15 344 - -
Bpe02g00324 361 Gene3D HUPs 15 340 IPR014729 -
Bpe02g00324 361 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00324 K14168 CTU1, NCS6; cytoplasmic tRNA 2-thiolation protein 1 [EC:2.7.7.-] - pvy:116112654 626.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g135 . . . . Bpe02g00324 . . Bma01g02099 . . . . . . . . . Bhi04g00091 . . . . . . Cla08g01387 Cam08g1860 Cec08g1439 Cco08g1571 Clacu08g1554 . Cre08g1338 . . . . . . . Cme03g01549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01277 . Chy03g00560 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013567 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 0 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00324 Bpe_Chr02 FPKM 0.404896 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0