Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00325 ATGGCGCTGAGCTCTCTCAGAGAGTTGCTCTGTTTCTTGTTTGCCGTTTCTTTCTCATTCTTTTCCACTGTGGGTGCGGATAATCCTTACAGATTCTTCGATTGGAATGTCACTTATGGAGATATCTATCCACTCGGTGTTCGCCAGCAGGGGATTCTCATCAATGGCCAATTCCCAGGCCCAGACATTTTCTCTGTTACAAATGATAATATCATTATCAATGTCTTCAACAGCTTGGACGAGCCTTTTCTCCTCTCCTGGAATGGCATTCAGCAGAGGAGGAATTCGTACGAAGATGGAGTTTTGGGAACTACGTGCCCCATTCCTCCGGGAAAGAACTTCACTTACATTCTCCAAATGAAGGATCAGATCGGAAGCTTTTATTACTTTCCCTCTCTTGGTTTCCACAAGGCCGCCGGTGGTTTCGGAGGTATCAGAATCCTGAGTCGGCCGCAGATTCCTGTCCCTTTTCCTGATCCCGCCGCCGATTATACAGTCCTCATTGGTGACTGGTATCAGGCTAACCACACGGCCTTGAGAGCTCAACTGGATCGTGGTAAGAAACTTCCGTTTCCTGATGGAATCCTCATCAATGGCCGCGGCCCTAATGGCACCTCTTTTTATGTTGAACAAGGAAAAACTTACAGGCTGAGAATATCAAACGTAGGGCTACAAAATTCACTCAACTTCAGAATTGAAGGCCACAAAATGACATTGGTGGAGGTGGAGGGAACTCACACCATGCAGACCGTTTTCTCTTCTCTGGACGTTCACGTGGGACAATCTTATTCCGTTCTGGTGACGGCGGACCAGCCGGTTCGGAGCTATTTCGTTGTGGTTTCCACTCGATTCACCTCTTCGGTCCTGACCACCACCGGGTTTCTTCGTTACGGTAATTCTGGTAGGCCTCCTCTAGGCCCTCTTCCCGGTGGCCCCACAATCCAAGTCGACTGGTCCCTCAACCAAGCACGTGCCATTAGGACCAATCTTACAGCGAGTGGACCGAGGCCGAACCCTCAAGGGTCATACCACTATGGTCTTATCAACACAACGAGAACCATCATCCTAGCCAACTCGCCCGGCCTCGTGAGTGGCAAGCAAAGGTATGCAGTTAACAGCGTGTCCTTTGTCCCCGCCGATACTCCATTGAAGATCGCTGATTACTTCAAAATCGGAGGAGTTTTTCGCGTCGGAAGCCTTTCCGATAGGCCCACTGGCGGTGGCATCTACCTCGACACATCGGTTTTGGGTGCTGATTATAGAGCGTTTATTGAGATTGTATTCCAAAACAAGGAGGACATAATTCAAAGTTGGCACCTTAGTGGATACTCTTTCTTCGTCGTAGGCATGGATGGAGGCCAGTGGAACAGCACTTGCAGAGATCAGTACAATCTCCGAGATGCGGTTGCGCGATGCACAGTTCAGGTATATCCAAAATCATGGACGGCGATATACGTATCGCTGGACAACGTAGGAATGTGGAACTTGAGGTCGGAGTTCTGGGCAAGACAATACCTCGGCCAACAACTCTACTTGCGGGTTTATACGGCGTCCACTTCGCTCAGGGATGAGTACCCAATTCCAAAGAACGCTCTTCTCTGCGGCAGAGCCGCCGGCAGAAGAACTCGTCCTCTCTAA 1638 49.69 MALSSLRELLCFLFAVSFSFFSTVGADNPYRFFDWNVTYGDIYPLGVRQQGILINGQFPGPDIFSVTNDNIIINVFNSLDEPFLLSWNGIQQRRNSYEDGVLGTTCPIPPGKNFTYILQMKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPQIPVPFPDPAADYTVLIGDWYQANHTALRAQLDRGKKLPFPDGILINGRGPNGTSFYVEQGKTYRLRISNVGLQNSLNFRIEGHKMTLVEVEGTHTMQTVFSSLDVHVGQSYSVLVTADQPVRSYFVVVSTRFTSSVLTTTGFLRYGNSGRPPLGPLPGGPTIQVDWSLNQARAIRTNLTASGPRPNPQGSYHYGLINTTRTIILANSPGLVSGKQRYAVNSVSFVPADTPLKIADYFKIGGVFRVGSLSDRPTGGGIYLDTSVLGADYRAFIEIVFQNKEDIIQSWHLSGYSFFVVGMDGGQWNSTCRDQYNLRDAVARCTVQVYPKSWTAIYVSLDNVGMWNLRSEFWARQYLGQQLYLRVYTASTSLRDEYPIPKNALLCGRAAGRRTRPL 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2111468 2114448 + Bpe008166.1 Bpe02g00325 98474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00325 545 PANTHER OSJNBA0084K11.18 PROTEIN 14 538 - -
Bpe02g00325 545 Pfam Multicopper oxidase 37 150 IPR011707 GO:0005507
Bpe02g00325 545 SUPERFAMILY Cupredoxins 347 536 IPR008972 -
Bpe02g00325 545 Gene3D - 161 336 IPR008972 -
Bpe02g00325 545 PANTHER MULTI-COPPER OXIDASE 14 538 IPR045087 -
Bpe02g00325 545 Gene3D - 346 541 IPR008972 -
Bpe02g00325 545 SUPERFAMILY Cupredoxins 27 177 IPR008972 -
Bpe02g00325 545 Gene3D - 30 151 IPR008972 -
Bpe02g00325 545 SUPERFAMILY Cupredoxins 157 337 IPR008972 -
Bpe02g00325 545 Pfam Multicopper oxidase 401 517 IPR011706 GO:0005507|GO:0016491
Bpe02g00325 545 Pfam Multicopper oxidase 163 299 IPR001117 -
Bpe02g00325 545 CDD CuRO_1_AAO_like_1 32 147 IPR034273 GO:0005507
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00325 - - - jre:108984516 942.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00325 Bpe05g00167 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00325 Bpe-Chr2:2111468 Bpe11g00948 Bpe-Chr11:7044613 0 dispersed
Bpe02g00952 Bpe-Chr2:8693632 Bpe02g00325 Bpe-Chr2:2111468 0 transposed
Bpe06g00228 Bpe-Chr6:12322262 Bpe02g00325 Bpe-Chr2:2111468 0 transposed
Bpe02g00325 Bpe-Chr2:2111468 Bpe02g01745 Bpe-Chr2:19839791 0 wgd
Bpe02g00325 Bpe-Chr2:2111468 Bpe05g00167 Bpe-Chr5:5277572 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g137 Blo01g01619 . . . Bpe02g00325 . . Bma01g02394 Cmo05g00336 . Cma01g01997 Cma09g00072 Car01g01569 . . . . Bhi04g00090 . . . Hepe10g0675 . . Cla08g01388 Cam08g1861 Cec08g1440 Cco08g1572 Clacu08g1555 . Cre08g1339 . Cone7ag1919 Cone17ag1436 Cone20ag0046 Lsi04g01790 Csa04g02681 . Cme03g01548 Blo17g00723 Blo18g00757 Bda08g01183 . . Bpe05g00167 Bma01g00712 . Sed03g1664 Cmo01g02058 Cmo09g00073 . Cma05g00335 Car05g00279 . . . Bhi09g02935 Tan01g5072 . . Hepe01g2318 Mch11g0074 . Cla05g01582 Cam05g1690 Cec05g1693 Cco05g1740 Clacu05g1679 Cmu05g1570 Cre05g1687 Lsi08g01278 . Chy07g00372 Cme07g00076
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000048 7 10 7 9 7 11 7 11 13 11 8 10 14 9 12 16 10 16 4 10 12 10 16 10 14 12 11 19 23 4 333
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00325 Bpe_Chr02 FPKM 12.85281 12.541247 14.129018 14.473828 9.279721 9.384016 9.352023 27.913395 29.137119 31.643373