Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00326 ATGGATGCACAGGTGGATAACATATTGAAAAATGAAGCCAGCGAAGAGAAAGGCGAGCGTGCAAGGATGGCATCATTTGTTGGTGCGATGGCCATTGCTGATTTAGTCAAAACAACCTTAGGCCCAAAAGGAATGGACAAAATTTTGCAATCTACTGGCAGAGGACGTTCTGTGACTGTCACAAATGATGGGGCCACCATTTTAAAGTCTCTTCATGTTGACAACCCAGCTGCTAAAGTTCTAGTTGTTATAGACATTTCAAAAGTTCAAGATGACGAAGTGGGTGATGGAACAACCTCTGTAGTTGTCTTGGCAGGAGAACTTTTAAGAGAAGCAGAGAAGCTGGTTGCAGCTAAGATTCATCCAATGACAATCATATCAGGCTATAGAATGGCGGTAGAATGTGCACGCAATGCACTGTTGGAAAAAGTCGTTGATAACAAAGACAATTCAGAGATGTTCAAATCAGACTTGATGAGGATTGCAATGACTACCTTGAGCTCTAAAATTCTCTCACAGGACAAAGAACATTTTGCAACACTGGCTGTGGATGCTGTAATGAGGCTAAAGGGAAGCACAAACTTAGAGTCAATTCAAATCATAAAGAAGCCTGGCGGATCATTGAAGGATTCTTTTCTCGATGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGGCAACCCAAGCGCATTGAGAATGCAAATATTTTGGTGGCAAATACAGCAATGGACACAGATAAAGTCAAAATCTATGGAGCACGAGTTCGTGTTGATTCAATGTCGAAGGTTGCTGAGATTGAGGGAGCTGAGAAGGAAAAAATGAGAGAGAAGGTTCAAAAGATTATAGGTCATGGCATTAATTGCTTTGTTAATCGACAGTTGATCTATAATTTCCCAGAGGAGCTTTTTGCTGATGCGGGAATACTTGCTATTGAGCATGCTGATTTTGATGGCATTGAACGTCTGGCTTTAGTAACTGGTGGTGAAATTGCATCAACCTTTGACAATCCTGAATCTGTCAAACTTGGGCATTGCAAACTCATTGAGGAGATCATGATTGGCGAGGACAAGTTGATCCACTTTTCTGGCGTTGAAATGGGCCAGGCTTGTACAATAGTTTTAAGAGGAGCTAGCCATCACGTTCTTGACGAGGCGGAAAGGTCTCTGCATGATGCTTTGTGCGTGTTATCCCAAACAGTCATTGACAGTAGGGTTCTGCTAGGGGGTGGATGGCCGGAGATGATCATGGCTAAAGAAGTGGATGAGCTGGCTAGGAAGACTCCGGGCAAGAAATCACATGCCATTGAAGCTTTCTCAAGGGCACTTCTAGCAATCCCCACCATCATTGCTGATAATGCTGGGCTGGACAGTGCTGAGTTAATTTCCCAGCTTCGTGCTGAACACCATAAGGAAGGTTGCACTGCCGGAATTGATGTCATCTCAGGATCCGTGGGAGACATGGCAGAACGGGGAATCTCAGAAGCATTTAAAGTGAAGCAAGCAATATTGCTATCTGCAACAGAGGCGGCAGAGATGATTCTTAGAGTTGATGAAATCATCACATGCGCTCCACGGAGGAGAGAAGATAGAATGTGA 1596 43.55 MDAQVDNILKNEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHVDNPAAKVLVVIDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGYRMAVECARNALLEKVVDNKDNSEMFKSDLMRIAMTTLSSKILSQDKEHFATLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGARVRVDSMSKVAEIEGAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVIDSRVLLGGGWPEMIMAKEVDELARKTPGKKSHAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHHKEGCTAGIDVISGSVGDMAERGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRRREDRM 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2116700 2121003 + Bpe008167.1 Bpe02g00326 98475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00326 531 ProSitePatterns Chaperonins TCP-1 signature 3. 90 98 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe02g00326 531 PRINTS Tailless complex polypeptide 1 (chaperone) signature 58 76 IPR017998 GO:0140662
Bpe02g00326 531 PRINTS Tailless complex polypeptide 1 (chaperone) signature 405 417 IPR017998 GO:0140662
Bpe02g00326 531 PRINTS Tailless complex polypeptide 1 (chaperone) signature 371 393 IPR017998 GO:0140662
Bpe02g00326 531 PRINTS Tailless complex polypeptide 1 (chaperone) signature 90 109 IPR017998 GO:0140662
Bpe02g00326 531 PRINTS Tailless complex polypeptide 1 (chaperone) signature 34 50 IPR017998 GO:0140662
Bpe02g00326 531 ProSitePatterns Chaperonins TCP-1 signature 2. 60 76 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe02g00326 531 SUPERFAMILY GroEL-intermediate domain like 154 402 IPR027410 -
Bpe02g00326 531 PANTHER CHAPERONIN 8 529 IPR017998 GO:0140662
Bpe02g00326 531 ProSitePatterns Chaperonins TCP-1 signature 1. 37 49 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Bpe02g00326 531 Pfam TCP-1/cpn60 chaperonin family 32 521 IPR002423 GO:0005524
Bpe02g00326 531 Gene3D GroEL 215 367 IPR027409 -
Bpe02g00326 531 Gene3D - 29 520 IPR027413 -
Bpe02g00326 531 SUPERFAMILY GroEL equatorial domain-like 15 523 IPR027413 -
Bpe02g00326 531 CDD TCP1_beta 8 526 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bpe02g00326 531 TIGRFAM chap_CCT_beta: T-complex protein 1, beta subunit 7 527 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bpe02g00326 531 Gene3D - 146 403 IPR027410 -
Bpe02g00326 531 PANTHER BNAA02G05110D PROTEIN 8 529 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Bpe02g00326 531 SUPERFAMILY GroEL apical domain-like 210 376 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00326 K09494 CCT2; T-complex protein 1 subunit beta - qsu:112018290 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00326 Bpe-Chr2:2116700 Bpe08g01170 Bpe-Chr8:13451033 9.64E-95 dispersed
Bpe15g00534 Bpe-Chr15:16493274 Bpe02g00326 Bpe-Chr2:2116700 8.05E-39 dispersed
Bpe02g00326 Bpe-Chr2:2116700 Bpe14g01010 Bpe-Chr14:7495246 1.61E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g138 Blo01g01618 . . . Bpe02g00326 . . Bma01g02393 . . Cma01g01996 . Car01g01568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00955 . . . . . . Cmo01g02057 . . . . . . Cpe02g00049 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00326 Bpe_Chr02 FPKM 0.0 0.0 1.164807 1.111165 222.440063 207.652222 212.616608 0.240954 0.0 0.0