Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00331 ATGTCCCCGCCGGCGAGGAGCAAAGGCTGGAATGGGTCGCCGGAGAAGCATTATCCTCCGCCATATGCCACCCATGAAGAGGTCTCAGTAGACCCCATTATCTTCTGGGACACTCTCCGGCGCTTCCATTTCACTATGAACACAAAGTTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTATTATATTTGGAGGTCACCAGAAGGGGCGGTTTTGAAAAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAGATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTCACTACTCCAAGAGGTTCCTCTTTCCTCCCTAATGCTCTTTTTTTTTCGTCAGAATCTCTCTATCTCTCTCTCTCTCTAGCAGCTGCATTTACTATTAGTGACCCTTCATGTATAAATGAGTTGGCTATTGTGGAGTACACTCCAAAGAAGACGAATTCGCCTGAACCAACTGCAGAAGTTATTGGAACAATTGAAGCGAAGTTCGACTGTGGTTATTTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGGGGAGTGCTTTACCATCCAGAAGAGCCAGCTTTATTATCACCGCCCTCATTTCCACATTTCAACAATGTGCAAGCACTTGTTCCCTACAAACATGGCGGACAGTACCATTCCAGTGGCCGGAGAAGGAGGAGGAGCCGGAGAAAGGGAGACCCGAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCTCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCTGATGAGAGGATGGTTTACCAAAACATAGGATTGAAAGATAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGACAGGCAGACACTGGGAGTTAATGAATGA 1026 44.74 MSPPARSKGWNGSPEKHYPPPYATHEEVSVDPIIFWDTLRRFHFTMNTKFMIPVIGGKELDLHVLYLEVTRRGGFEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFLPNALFFSSESLYLSLSLAAAFTISDPSCINELAIVEYTPKKTNSPEPTAEVIGTIEAKFDCGYFVSAKVGSEILRGVLYHPEEPALLSPPSFPHFNNVQALVPYKHGGQYHSSGRRRRRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPDERMVYQNIGLKDKERYKRELKEYKDRQTLGVNE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2162620 2164178 + Bpe008172.2 Bpe02g00331 98480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00331 341 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bpe02g00331 341 SMART ARID_2 26 116 - -
Bpe02g00331 341 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Bpe02g00331 341 Gene3D - 23 127 IPR036431 GO:0003677
Bpe02g00331 341 SUPERFAMILY HMG-box 262 333 IPR036910 -
Bpe02g00331 341 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bpe02g00331 341 MobiDBLite consensus disorder prediction 246 260 - -
Bpe02g00331 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 337 - -
Bpe02g00331 341 SUPERFAMILY ARID-like 24 129 IPR036431 GO:0003677
Bpe02g00331 341 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bpe02g00331 341 SMART bright_3 30 121 IPR001606 GO:0003677
Bpe02g00331 341 Gene3D High mobility group box domain 249 338 IPR036910 -
Bpe02g00331 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Bpe02g00331 341 SMART hmgende2 264 333 IPR009071 -
Bpe02g00331 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 337 - -
Bpe02g00331 341 CDD HMGB-UBF_HMG-box 265 329 - -
Bpe02g00331 341 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00331 Bpe-Chr2:2162620 Bpe04g01069 Bpe-Chr4:8141966 1.54E-67 dispersed
Bpe02g00331 Bpe-Chr2:2162620 Bpe05g01140 Bpe-Chr5:23684783 3.15E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20862 PF01388 ARID 2.90E-18 CL0123 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00331 - - csv:101219101 457.603