Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00331 ATGTCCCCGCCGGCGAGGAGCAAAGGCTGGAATGGGTCGCCGGAGAAGCATTATCCTCCGCCATATGCCACCCATGAAGAGGTCTCAGTAGACCCCATTATCTTCTGGGACACTCTCCGGCGCTTCCATTTCACTATGAACACAAAGTTCATGATTCCTGTGATTGGGGGGAAGGAGCTAGACCTGCATGTATTATATTTGGAGGTCACCAGAAGGGGCGGTTTTGAAAAGGTAGTTGCAGAGAAAAAATGGAGGGAAGTGGGCAATATATTTAGATTCTCCCCTACAACAACAAGTGCTTCTTTTGTGTTGAGGAAACACTACTTCAGTCTTCTCTACCATTATGAACAGGTTTACTTCTTCGAGAGACAAGGCGTTCTCACTACTCCAAGAGGTTCCTCTTTCCTCCCTAATGCTCTTTTTTTTTCGTCAGAATCTCTCTATCTCTCTCTCTCTCTAGCAGCTGCATTTACTATTAGTGACCCTTCATGTATAAATGAGTTGGCTATTGTGGAGTACACTCCAAAGAAGACGAATTCGCCTGAACCAACTGCAGAAGTTATTGGAACAATTGAAGCGAAGTTCGACTGTGGTTATTTTGTGTCTGCAAAAGTGGGTTCAGAGATTCTCAGGGGAGTGCTTTACCATCCAGAAGAGCCAGCTTTATTATCACCGCCCTCATTTCCACATTTCAACAATGTGCAAGCACTTGTTCCCTACAAACATGGCGGACAGTACCATTCCAGTGGCCGGAGAAGGAGGAGGAGCCGGAGAAAGGGAGACCCGAACTACCCAAAACCTAACAGAAGTGGGTATAACTTCTTTTTCGCAGAAAAACATTACAAACTCAAGTCTCTGTATCCAAATAGAGAGAGGGAGTTTACAAAGATGATAGGAGAGTCTTGGAGCAATCTCAGCCCTGATGAGAGGATGGTTTACCAAAACATAGGATTGAAAGATAAGGAAAGATACAAGAGGGAATTGAAAGAGTACAAAGACAGGCAGACACTGGGAGTTAATGAATGA 1026 44.74 MSPPARSKGWNGSPEKHYPPPYATHEEVSVDPIIFWDTLRRFHFTMNTKFMIPVIGGKELDLHVLYLEVTRRGGFEKVVAEKKWREVGNIFRFSPTTTSASFVLRKHYFSLLYHYEQVYFFERQGVLTTPRGSSFLPNALFFSSESLYLSLSLAAAFTISDPSCINELAIVEYTPKKTNSPEPTAEVIGTIEAKFDCGYFVSAKVGSEILRGVLYHPEEPALLSPPSFPHFNNVQALVPYKHGGQYHSSGRRRRRSRRKGDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWSNLSPDERMVYQNIGLKDKERYKRELKEYKDRQTLGVNE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2162620 2164178 + Bpe008172.2 Bpe02g00331 98480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00331 341 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bpe02g00331 341 SMART ARID_2 26 116 - -
Bpe02g00331 341 Pfam HMG (high mobility group) box 265 332 IPR009071 -
Bpe02g00331 341 Gene3D - 23 127 IPR036431 GO:0003677
Bpe02g00331 341 SUPERFAMILY HMG-box 262 333 IPR036910 -
Bpe02g00331 341 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
Bpe02g00331 341 MobiDBLite consensus disorder prediction 246 260 - -
Bpe02g00331 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 337 - -
Bpe02g00331 341 SUPERFAMILY ARID-like 24 129 IPR036431 GO:0003677
Bpe02g00331 341 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bpe02g00331 341 SMART bright_3 30 121 IPR001606 GO:0003677
Bpe02g00331 341 Gene3D High mobility group box domain 249 338 IPR036910 -
Bpe02g00331 341 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 265 332 IPR009071 -
Bpe02g00331 341 SMART hmgende2 264 333 IPR009071 -
Bpe02g00331 341 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 337 - -
Bpe02g00331 341 CDD HMGB-UBF_HMG-box 265 329 - -
Bpe02g00331 341 MobiDBLite consensus disorder prediction 242 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00331 - - - csv:101219101 457.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00331 Bpe-Chr2:2162620 Bpe04g01069 Bpe-Chr4:8141966 1.54E-67 dispersed
Bpe02g00331 Bpe-Chr2:2162620 Bpe05g01140 Bpe-Chr5:23684783 3.15E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g01140 CCT 27 384 ARID Transcription Factor Family AT1G04880 57.9 4.0e-102 368.6
Bpe04g01069 CCT 30 382 ARID Transcription Factor Family AT1G04880 53.4 1.8e-86 316.6
Bpe02g00331 . 16 337 ARID Transcription Factor Family AT1G76110 60.6 8.0e-103 370.5
Bpe03g00693 CCT,ECH 2 779 ARID Transcription Factor Family AT3G43240 56.4 4.2e-253 870.9
Bpe10g00717 CCT,ECH 1 770 ARID Transcription Factor Family AT3G43240 56.0 6.4e-246 847.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20862 PF01388 ARID 2.90E-18 CL0123 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00331 Bpe_Chr02 FPKM 1.840425 0.674493 18.320076 20.828012 9.103107 10.173581 10.113874 12.858309 14.949454 14.746165