Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00333 ATGGCCTCCGTAACCTCAGCAGCAGTCGCCATCCCCTCCTTCAGCGGCCTTAAAGCCTCTGGCTTCGCAGGAAAGGCTACCGCCATCATTAAGGCCTCGCCCGTACCTACTCCAAGGTTCGGTGTTAAGGCCTCTCTGAAAGACATCGGCGTCGCAGTTGTAGCCACTGCCGCAAGCGCCGCGCTTGCGAGCAATGCATTGGCCGCAACAGTTCTTCTGGGATCTGACAGCGGAGAGTTGGCTTTCGTTCCAAACGATTTCTCAATAGCCTCTGGGGAGACAATCGTGTTCAAAAACAACGCCGCGTTTCCTCACAACGTCGTGTTCGACGAAGACGAGATACCCAGCGGAGTAAGCGCCTCTAAAATCTCGATGAACGAGGAAGATCTTCTCAACGCTCCCGGCGAGCAATATTCGGTGACTCTGACTGAGAAAGGTAGCTACAGTTTCTATTGCTCTCCTCATCAGGGAGCCGGAATGGTGGGAAAAGTGACAGTCAACTGA 504 53.97 MASVTSAAVAIPSFSGLKASGFAGKATAIIKASPVPTPRFGVKASLKDIGVAVVATAASAALASNALAATVLLGSDSGELAFVPNDFSIASGETIVFKNNAAFPHNVVFDEDEIPSGVSASKISMNEEDLLNAPGEQYSVTLTEKGSYSFYCSPHQGAGMVGKVTVN 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2172952 2173455 + Bpe008174.1 Bpe02g00333 98482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00333 167 PRINTS Type I copper blue protein family signature 88 101 IPR001235 GO:0005507|GO:0009055
Bpe02g00333 167 PRINTS Type I copper blue protein family signature 144 158 IPR001235 GO:0005507|GO:0009055
Bpe02g00333 167 PRINTS Type I copper blue protein family signature 103 118 IPR001235 GO:0005507|GO:0009055
Bpe02g00333 167 PRINTS Plastocyanin signature 97 115 IPR002387 GO:0005507|GO:0009055
Bpe02g00333 167 PRINTS Plastocyanin signature 146 165 IPR002387 GO:0005507|GO:0009055
Bpe02g00333 167 PRINTS Plastocyanin signature 74 93 IPR002387 GO:0005507|GO:0009055
Bpe02g00333 167 SUPERFAMILY Cupredoxins 67 167 IPR008972 -
Bpe02g00333 167 Gene3D - 70 167 IPR008972 -
Bpe02g00333 167 PANTHER PLASTOCYANIN 1 167 - -
Bpe02g00333 167 PANTHER PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED 1 167 - -
Bpe02g00333 167 CDD Plastocyanin 71 167 IPR002387 GO:0005507|GO:0009055
Bpe02g00333 167 Pfam Copper binding proteins, plastocyanin/azurin family 70 167 IPR000923 GO:0005507|GO:0009055
Bpe02g00333 167 ProSitePatterns Type-1 copper (blue) proteins signature. 146 160 IPR028871 -
Bpe02g00333 167 TIGRFAM cyanin_plasto: plastocyanin 70 167 IPR002387 GO:0005507|GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00333 K02638 petE; plastocyanin - ini:109184511 241.891
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00333 Bpe04g00263 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00333 Bpe-Chr2:2172952 Bpe04g00263 Bpe-Chr4:1725273 1.28E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g157 Blo01g01613 . . . Bpe02g00333 Bpe04g00263 Bma04g00264 Bma01g02387 . . . Cma09g00082 . . . Cpe06g00046 . . . . . . . . . . . . . . . . . . . Lsi04g01781 . Chy04g00389 . . . . . . . . . . . Cmo09g00081 . . . Car09g00071 . . . . . . . . . Cla05g01595 Cam05g1706 Cec05g1706 Cco05g1762 Clacu05g1693 Cmu05g1582 Cre05g1699 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011843 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 0 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00333 Bpe_Chr02 FPKM 0.922636 0.906373 2.931063 3.426149 34.092415 36.352802 37.359051 5.265522 5.123538 4.717893