Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00338 ATGATTCCGGTGGGAATTGAAGACGAGGAGAAATGGCTCGCTGAAGGAATTGCTGCCATTCAACATAATGCCTTTTATATGCATCGCGCTCTCGACGCTAATAATCTTCGAGAAGCACTCAAATACTCGGCTCAGATGCTATCCGAACTTCGTACTTCCAAGCTTTCCCCGCATAAATATTACCAACTCTATATGAGAGCATTTGATGAGCTGAGGAAGTTGGAAATGTTTTTCAAGGACGAAAGCAGGCATGGCGTTTCAATTGTTGATTTATATGAACTTGTTCAACACGCCGGCAACATATTGCCTAGACTGTATCTTCTGTGTACTGTGGGATCTGTATACATCAAATCAAAGGAGGTCCCTGCTAAAGACGTCCTCAAAGATCTTGTTGAAATGTGTCGTGCTGTTCAACACCCAACACGTGGACTCTTCCTAAGAAATTATCTTGCTCAAGTCAGTAGAGACAAGTTACCTGACATTGGTTCAGAATATGAAGGAGATGGTGATACAGTCATGGATGCAGTTGAGTTTGTGCTGCAAAATTTTACTGAAATGAATAAGCTTTGGGTGCGAATTCAGCATCAGGGACCAAATCGGGCTAGAGAAAAGCAGGAAAAGGAAAGAGGAGAGCTTCGCGATCTTGTCGGGAAAAATCTTCACGTTCTCGGTCAGATTGAGGGTGTGGACATTGAAATATACAAAAACACCGTTCTTCCTAAAGTCTTGGAGCAGGTTGTCAACTGCAAAGATGAGCTTGCTCAATATTATTTGATGGATTGCATAATTCAAGTTTTTCCTGACGAGTACCATCTGCAAACGTTAGAGATATTGTTGGGTGCTTGCCCACAACTTCAGCCAGCTGTAGACATCAAGACAGTGTTGTCTCGATTAATGGAGAGATTGTCAAACTATGCTGCGTCTAGTCCAGAGGTTCTGCCTGATTTTCTACAAGTTGAAGCTTTCTCTAAATTAAGCAATGCTATTGGGAAGGTTATTGAAGCACAACTTGACATGGCTACTGTTGGAGTTATAACATTGTATGTCTCTCTTCTTACCTTTACCCTTCACGTTCACTCGGATCGGTTGGACTATGTGGACCAAGTGTTGGGAGCATGTGTTAAGAAGCTTTCTGCGCAACCAAAACCCCTAGACATTAAGGCAACAAAGCAAGTTGTTGCACTTCTAACTGCCCCTTTGGAGAAATATAATGATATAGTAACAGCTCTGACGCTCTCCAATTATCCCCGTGTGATGGACCACCTCGACAATGAAACTAATAAAGTCATGGCGATGGTTATTATTCAAAGTATCATGAAAAATAGCAGCTGCATCTCTACTGCCGATAAGGTTGAGGTGTTGTTTGAATTAATAAAAGGACTCATCACAGATATGGATGACATTACTACATGTGATATGCTTGATGAAGAGGATTTTAAGGAAGAGCAGAACTCAGTTGCTCGTTTAATACACATGCTTGACAATGATGATCCAGGAGAAATGTTAAAGATCATCTTCACAGTTAAGAAGCATATTATGAGGGGAGGATTAAAACGCCTGCCTTTTACAATTCCATCTTTGACTTTTGCAGCTCTCAGTTTAGGTAGGCGTTTGCATGGCCAAGAATGCAAGGCTATAGAAGAAGAAATGCCTCCTACACCAAAGAAAATATTTCAGCTTCTGAATGAGATTATTGAATCTCTTTCATCTATTCCATCTCCGGAATTGGCATTGAGATTGTACTTGCAATGTGCTGAGGCTGCTAATGACTGTGATCTTGAACCTGTTGCTTATGAATTTTTCACTCAGGCGTTTATACTATATGAGGAGGAAATTGCAGATTCCAAAGCTCAAGTAACTGCTATACATCTAATAATCGGAACTCTTCAAAGAATGAACGTATTTGGTGTGGAGAATAGGGACACATTAACCCACAAGGCAACAGGGTATTCAGCTAAGCTCTTGAAGAAACCTGATCAATGTCGAGCGGTTTATGCTTGTTCACATCTTTTTTGGGTGGAAGAACAAGATGGCATTAGGGATGGAGAAAGAGTACTGCTTTGCCTCAAGCGAGCATTGAGAATTGCAAATGCGGCTCAACAAATGGCCAACGTAACGCGGGGTAGCAGCGGACCAGTTACACTTTTTGTTGAAATACTGAACAAGTACATTTATTATTTTGAGAAAGGAAACCCACATATTACGACAACAGCCATTCAAAGCCTAGTGGAACTAATCAAAACTGAATTGCGGACAGACTCCCCGAGCACGAGTCCTCCTCAGTCAGATCCATTCTTTACAAGCACATTACGGTACATTCAGTTCCAGAAACAAAAAGGTGGTCCAATGAGTGAGAAATATGATCCTATCAAGAAAGCCTTCTTATTCCGCTCATACTCCCCCTCGAGTTTTCCCCCCCGCCAGATTCCTTCCCGGGTTGCTCTTCTCTCTCTCGCCGCGATTGAAGCTTTACTTTCGTCGGAGATAGCGATGCAACCAGGAGATTACAGTTCCGCTCCGTATTACCAATACCCGCACCTCCAAAACCCTAATCCTATCCCCAATTCTACTTCCACTCCCCCTGATCTCCACCAACCGACCCCCTTCGCCTCTGCGCCTCCCTTTTCCAACAATTACGCTCCCATTCCCTCCGATTACTCGGCTTATCCGCCTAATTACTCTTCATATTCTCAGAATTCCGATCATCTCTCCGTCTCCCCATCTGCTCCTTCCTTTTCTCCCTCCTCCAACCCTAATTTCCAGCCTTTCAATCCCACTCCTCAGCCCTCTCCTTTTCCTCCGTTTGAGTCCCACGTTCCCTTTCAATCTCCGCCACAGCAGCAGTCTTATTATTCACCTTATGATCAGCATCAGACATCTCACAATTATGCCCCATCGTCCTCTTCTGTTTCCGCCAACTCTGCCTCTGATCTGACGCTGAGTTCCAATTCTCAACACTCGTCCGAGCAATATGCTCCGTTTGGATCCTCTGTGCCGCCCGTATACGAGAATCCCTATGAGAATGTTGTGAAATTTAATCAGGGTAGTGGATTTGTTGATGATAAATATGGAAGTTACAATCAAAGCAAATCTGGTTTTGGTTTGGATCTGTACGGGAAGAGGATGGACAATGGTGTGACCCGTTATGAATCTAGTTATGATGATGGCTATGGCGACGGCGTGTTGGCTTACCAAGGGGGCAAGGCTGAGCCATATGGAGCTCGTGGTACCGCCCCCAACTCTTCGACATGGACTGGATTTGATGATTATGGGAGGCCAATCAGTTTTCCTTCTGGAAAAGAGCCTTCCAGTGGTTCAAGCAAGATTGTGCGAGCCACTCCAAAAGCAGATACTCAGGAAGACTTCAAGAGCGGTGTGCAAAAGTTTCGCGTTAAGCTGTTGGCTGAAAGTGGAGGCCAGACTACTTCGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTTGATCAAAATACTGGTCGGACATTGAGAATTTATCCTCTTGAGACCATTACAAGATGTGAAGTGATAGAGTCATCCACATTAGCATTTTGGTCTAAGAGTTCAGTGGATATTGAGCCACGAAGGATAAGATTGCAGTCCAATAGTTACACTACGAATACTCTTTTGGACACAGTGACTGCAGCAACAGTACAGTTTAAGGAGATGGGTGGAAGAAGCAGGCCACCTGATTCTTTGAAGTCGAGTGAACAGTCTATAGAAAGGAAGAAAGGATTTGGTGATTGGATGAGCTTAGTGAAGCCTGGAAATGTGGAAAAAGATCATTGGGTTCCTGATGAAGCTGTTTCTAAGTGCACGTCTTGTGGAACAGATTTTGGTGCTTTTGTGCGCAAGCATCACTGCAGGAACTGTGGTGATATTTTCTGTGACAAATGCACTCAGGGTCGAATTACTTTAACTTCCGAGGAGAATGCCCCTCTGGTTCGAGTTTGTGACAGATGCTTGGCAGAAGTAACTCAGAGGCTGACTAATGCCAAAGAAGCTGCTAGTAAGCCTGCATTGACGAGTCATGAGGATCTGGCCAAAAAGCTTCAGGACGAAATGGAAAGAAACCGCAAGTCATCAGGTTCTAGATCTGATGGTCCTGGGAAGCGAATGAAGGAGGTTGCTTGCCCCACCTGCACTGTTCATTTGCAGGTTCAGGTTCCCACCTCAGGTTCTGAGACAATAGAATGTGGCGTCTGCCAGAATGCGTTCCTTGTGAGTGCATCCTGA 4242 44.06 MIPVGIEDEEKWLAEGIAAIQHNAFYMHRALDANNLREALKYSAQMLSELRTSKLSPHKYYQLYMRAFDELRKLEMFFKDESRHGVSIVDLYELVQHAGNILPRLYLLCTVGSVYIKSKEVPAKDVLKDLVEMCRAVQHPTRGLFLRNYLAQVSRDKLPDIGSEYEGDGDTVMDAVEFVLQNFTEMNKLWVRIQHQGPNRAREKQEKERGELRDLVGKNLHVLGQIEGVDIEIYKNTVLPKVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLEILLGACPQLQPAVDIKTVLSRLMERLSNYAASSPEVLPDFLQVEAFSKLSNAIGKVIEAQLDMATVGVITLYVSLLTFTLHVHSDRLDYVDQVLGACVKKLSAQPKPLDIKATKQVVALLTAPLEKYNDIVTALTLSNYPRVMDHLDNETNKVMAMVIIQSIMKNSSCISTADKVEVLFELIKGLITDMDDITTCDMLDEEDFKEEQNSVARLIHMLDNDDPGEMLKIIFTVKKHIMRGGLKRLPFTIPSLTFAALSLGRRLHGQECKAIEEEMPPTPKKIFQLLNEIIESLSSIPSPELALRLYLQCAEAANDCDLEPVAYEFFTQAFILYEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVEEQDGIRDGERVLLCLKRALRIANAAQQMANVTRGSSGPVTLFVEILNKYIYYFEKGNPHITTTAIQSLVELIKTELRTDSPSTSPPQSDPFFTSTLRYIQFQKQKGGPMSEKYDPIKKAFLFRSYSPSSFPPRQIPSRVALLSLAAIEALLSSEIAMQPGDYSSAPYYQYPHLQNPNPIPNSTSTPPDLHQPTPFASAPPFSNNYAPIPSDYSAYPPNYSSYSQNSDHLSVSPSAPSFSPSSNPNFQPFNPTPQPSPFPPFESHVPFQSPPQQQSYYSPYDQHQTSHNYAPSSSSVSANSASDLTLSSNSQHSSEQYAPFGSSVPPVYENPYENVVKFNQGSGFVDDKYGSYNQSKSGFGLDLYGKRMDNGVTRYESSYDDGYGDGVLAYQGGKAEPYGARGTAPNSSTWTGFDDYGRPISFPSGKEPSSGSSKIVRATPKADTQEDFKSGVQKFRVKLLAESGGQTTSDVLCQIGLDGIRMLDQNTGRTLRIYPLETITRCEVIESSTLAFWSKSSVDIEPRRIRLQSNSYTTNTLLDTVTAATVQFKEMGGRSRPPDSLKSSEQSIERKKGFGDWMSLVKPGNVEKDHWVPDEAVSKCTSCGTDFGAFVRKHHCRNCGDIFCDKCTQGRITLTSEENAPLVRVCDRCLAEVTQRLTNAKEAASKPALTSHEDLAKKLQDEMERNRKSSGSRSDGPGKRMKEVACPTCTVHLQVQVPTSGSETIECGVCQNAFLVSAS 1413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2200872 2218613 - Bpe008179.1 Bpe02g00338 98487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00338 1413 CDD FYVE_EEA1 1265 1327 - -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 941 994 - -
Bpe02g00338 1413 Pfam Vacuolar protein sorting-associated protein 35 12 748 IPR005378 GO:0015031|GO:0030906|GO:0042147
Bpe02g00338 1413 Gene3D - 467 777 IPR042491 -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 1354 1374 - -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 1099 1113 - -
Bpe02g00338 1413 Pfam FYVE zinc finger 1264 1328 IPR000306 GO:0046872
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 920 940 - -
Bpe02g00338 1413 SUPERFAMILY FYVE/PHD zinc finger 1263 1332 IPR011011 -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 897 919 - -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 847 875 - -
Bpe02g00338 1413 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 4 791 - -
Bpe02g00338 1413 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 1268 1328 IPR017455 -
Bpe02g00338 1413 SUPERFAMILY ARM repeat 206 773 IPR016024 -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 897 996 - -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 1095 1116 - -
Bpe02g00338 1413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1255 1333 IPR013083 -
Bpe02g00338 1413 Coils Coil 1343 1363 - -
Bpe02g00338 1413 MobiDBLite consensus disorder prediction 1354 1375 - -
Bpe02g00338 1413 SMART fyve_4 1260 1329 IPR000306 GO:0046872
Bpe02g00338 1413 PANTHER VACUOLAR SORTING PROTEIN 35 4 791 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00338 K18468 VPS35; vacuolar protein sorting-associated protein 35 - vvi:100243826 1313.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00338 Bpe04g00253 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00374 Bpe-Chr1:2353942 Bpe02g00338 Bpe-Chr2:2200872 2.65E-11 dispersed
Bpe02g00338 Bpe-Chr2:2200872 Bpe15g00484 Bpe-Chr15:16137086 0 dispersed
Bpe11g01120 Bpe-Chr11:8367916 Bpe02g00338 Bpe-Chr2:2200872 8.77E-08 dispersed
Bpe13g00406 Bpe-Chr13:11768105 Bpe02g00338 Bpe-Chr2:2200872 0 wgd
Bpe02g00338 Bpe-Chr2:2200872 Bpe04g00253 Bpe-Chr4:1687923 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g94 Blo01g01464 . . . . Bpe02g00338 . . . . . . Car09g00288 . . . Cpe06g00240 . . . . . . . Cla05g01574 . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g00591 . . . . . Cpe02g00262 Bhi09g03147 . . . Hepe01g1884 . . . . . . . . . . . . .
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025118 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00338 Bpe_Chr02 FPKM 0.0 1.020895 3.580829 3.550475 0.617274 1.315428 2.315694 0.0 0.411677 0.0