Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00342 ATGGGCGAGGGTTTCATATTCGAAGCGCCCAGCGACGAAGAAGCTGTCTACTCCGAGGTCGATACCGGCGACGAAGAACTCGAAGAAGATGAACCTCCTACTTCTCACAGCCGTACTGAATCACCATGGGAATTCGGTTCCTACTATGGATCAGTCGACGAAGAACATGCGAGGCGCAATACTACCTCCATTGACTCCAAAATCACCAAAGCTCTCGAACAACGTTCTTTGCCGTTTGATTCGTCAGTTGTTGACGATAACGAAAGCGTTGAATCGGAATCCGACGGACAAGAAAACTTCATACCAGAAGAAGACGACGACGACGGTGAAGTAGCTTGTGATGCAGGTGATAAGCAACCCTTTTATGAGTATTTAGATGGAGCTTCTCTCCACGCCAATTCATTTATGGAGCTCCATCTATCGCGCCCTTTACTTCGTGCTTGCGAAGCTTTGGGCTATTTAAAGCCTACGCCTATTCAGGCGACATGCATACCATTGGCCATTTCTGGGCGTGATATATGTGGGAGTGCCATTACTGGTTCGGGAAAGACAGCTGCTTACACATTGCCTACTTTGGAAAGGTTATACAGTGCTCCAAAGCGTAGTCGAGCAATAAGAGCTCTAATACTTACACCAACAAGAGAGTTGGCGGTTCAGGTTCATAGTATGATCGAGAAACTTGCACAGTTTACAGACATCAGATGTTGTCTGATCCTTGGTGGGGTTTCAATAAAGACTCAAGAGGCAGCCTTAAGGTCAATGCCAGACATTATTGTGGCAACTCCAGGGCGCATGATAGATCATTTACAAAATTCTATGTCTGTTGATTTGGATGATCTATCAATTCTTATTCTTGATGAGGCAGATAGACTCTTGGAGGATAATTTTGCAATGGAAACTAAAAGGCTGGTTTCCCTTTGTCCACGGAACAGACAAACAATGCTCTTCTCAGCTACAATGACAGACAAGGTTAATGAGCTTATTAAGCTTTCTTTAACCAATCCCTTGCGTCTCTCAGTTGATCCATCTATGAAACGGCCAGCAGCATTGACTGAGGAAATTGTTAGGATACGGAGACTGCGTGAAGCAAATCAGGAATCAGTGCTTTTTGCATTATGTTCGAAGACGTACACTTCAAAAGTTATCATCTTCAGTAAAACAAAACAGGAAGCACACAGGTTAAAAATTTTATTTGGTCTTACTGGCTTTAAAGCTGCCGAGCTTCATGGAAATCTTACCCAAGTCCAGCGTCTTGATGCCTTGGAACTTTTCAGGAACCAGCAAGTTGATTTTCTGATTGCGACAGATGTAGCTGCTCGTGGACTCGACATTAAGGGTGTTCAAACAGTCATAAACTATGCATGCCCGCGTAATCTCACCAGCTACACTCATCGCGTGGGTCGAACAGCTAGAATTGGTAGGAAAGGACATGCTGTTACTTTTGTGCTCGATGACGATAGATCCCTTCTAAAATCAATTGCTAAAAAGGCTGGTGCAAAGCTGAAAAGCAGAAATGTAGCTGAACAATCAATAACCAAATGGTCTCAGATAATTGAGCAAATGGAAGATCAAGTTAAAGAAATTTTGCAGGAAGAGAGAGAAGAGAGAGCCCTGAGAAAAGCTGAAATGGAAGTAACAAAGGCAGAAAATATGATTGCTCATAAGGAGGAAATTTTTTCACGCCCTAAAAGAACGTGGTTTGTGACAGAAAAGGAGAAACGGCTTGTAGCAAAGGTGACAAAGGAAAGCTTGGAGAAGGCTAACAAGTCTGGGAAGGAGATACTCAGCGCACAAGCAGCTGAGGATTTAAAAGCAAAAGAAAAGAGGAAGCGTGAGCGGGAGAAGAATTTGCCTCGGAGGAAGCGAAGAAAATTGGAAGCAGCTAGAGAAATGTTAGAAGAAAATAAGATCGGTGATATGGGAGGCAGTGGAAAAAATGAGGAAAAATCTGGAATGTCACTTGTTGACTTTGCATATAGACGTGCAAAAGCTGCAAAGGCTGCAAAAAAGGCAGTTGATTCGGGCAAGATTGTGAGGAAGGTAAGTGAATCGAAGCACCATTCTAAAAGATCAAAATCAAGGCCAGAAGAGATGAGAGAGTTGTTTCAGAATGATATGAATGACAGAAAGCAGAAAAGAAATGACAGCAGTTCCGGGCGGAAAAAGTCAAAGAATTCATTTAAGAGCAAATCAAGGTATAAGAGAAGGTAG 2211 43.01 MGEGFIFEAPSDEEAVYSEVDTGDEELEEDEPPTSHSRTESPWEFGSYYGSVDEEHARRNTTSIDSKITKALEQRSLPFDSSVVDDNESVESESDGQENFIPEEDDDDGEVACDAGDKQPFYEYLDGASLHANSFMELHLSRPLLRACEALGYLKPTPIQATCIPLAISGRDICGSAITGSGKTAAYTLPTLERLYSAPKRSRAIRALILTPTRELAVQVHSMIEKLAQFTDIRCCLILGGVSIKTQEAALRSMPDIIVATPGRMIDHLQNSMSVDLDDLSILILDEADRLLEDNFAMETKRLVSLCPRNRQTMLFSATMTDKVNELIKLSLTNPLRLSVDPSMKRPAALTEEIVRIRRLREANQESVLFALCSKTYTSKVIIFSKTKQEAHRLKILFGLTGFKAAELHGNLTQVQRLDALELFRNQQVDFLIATDVAARGLDIKGVQTVINYACPRNLTSYTHRVGRTARIGRKGHAVTFVLDDDRSLLKSIAKKAGAKLKSRNVAEQSITKWSQIIEQMEDQVKEILQEEREERALRKAEMEVTKAENMIAHKEEIFSRPKRTWFVTEKEKRLVAKVTKESLEKANKSGKEILSAQAAEDLKAKEKRKREREKNLPRRKRRKLEAAREMLEENKIGDMGGSGKNEEKSGMSLVDFAYRRAKAAKAAKKAVDSGKIVRKVSESKHHSKRSKSRPEEMRELFQNDMNDRKQKRNDSSSGRKKSKNSFKSKSRYKRR 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2241219 2247668 - Bpe008183.1 Bpe02g00342 98491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00342 736 MobiDBLite consensus disorder prediction 79 109 - -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 86 109 - -
Bpe02g00342 736 PANTHER RNA HELICASE 38 712 - -
Bpe02g00342 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 493 IPR027417 -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 689 722 - -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 601 649 - -
Bpe02g00342 736 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 284 292 IPR000629 -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 14 30 - -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 619 643 - -
Bpe02g00342 736 CDD SF2_C_DEAD 369 482 - -
Bpe02g00342 736 Coils Coil 596 617 - -
Bpe02g00342 736 SMART helicmild6 388 473 IPR001650 -
Bpe02g00342 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 512 IPR001650 -
Bpe02g00342 736 PANTHER BNAA01G17110D PROTEIN 38 712 - -
Bpe02g00342 736 Pfam DEAD/DEAH box helicase 157 327 IPR011545 GO:0003676|GO:0005524
Bpe02g00342 736 Pfam Helicase conserved C-terminal domain 371 473 IPR001650 -
Bpe02g00342 736 CDD DEADc_DDX27 144 339 - -
Bpe02g00342 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 338 IPR014001 -
Bpe02g00342 736 Gene3D - 122 341 IPR027417 -
Bpe02g00342 736 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Bpe02g00342 736 MobiDBLite consensus disorder prediction 1 65 - -
Bpe02g00342 736 Coils Coil 504 558 - -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 665 736 - -
Bpe02g00342 736 SMART ultradead3 152 353 IPR014001 -
Bpe02g00342 736 MobiDBLite consensus disorder prediction 665 681 - -
Bpe02g00342 736 Gene3D - 355 537 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00342 K13181 DDX27, DRS1; ATP-dependent RNA helicase DDX27 [EC:3.6.4.13] - zju:107412453 927.932
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00342 Bpe-Chr2:2241219 Bpe08g00440 Bpe-Chr8:2776144 7.61E-78 dispersed
Bpe06g00121 Bpe-Chr6:2000596 Bpe02g00342 Bpe-Chr2:2241219 1.95E-45 dispersed
Bpe02g00342 Bpe-Chr2:2241219 Bpe08g01247 Bpe-Chr8:13963206 5.36E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1136 Blo01g01604 . Bda01g00477 . Bpe02g00342 . . Bma01g02375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010512 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 0 1 1 0 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00342 Bpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0