Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00344 ATGGCTGGGAACTTTGGGTTTGACATGGACCAAAGAGACATCGATAGTTTTTTGAATACGACCATCGATGGTTTTATAGAAAGTCGGCTGCTTGACAAACAAAAGCGAACCCAACAGAAAGAACAGTGTGCAGAGAGATTGGCTGCTGAAGACGGAAGCTCTGATAAAGATGAAGAGGTTAGATACTCTGATCAAGCTGTGTTGGCAAATTTGGATTGGGGAATTGAAGCTCTTGAGGAAGCCATTGACACTTCCAACATAGAAACCAAGCTTGCTCGATTGAACCACGCCGAGAAGATGTTACAAGTTTGTGCTCTATTGAACTCCAAAGACAAAACTGCAGGTATCCCAAATTTCTATCTTTCTGCATGGGCACATCTCAATCTTTCATACCTGTGTAAACTGCGAGGAAATCTTCAGAATTCTGTTCTTCATGTTCTTGAGATGTTTTCGGTGGACCCTTTTTTCTCAAGGATCGATTTTGCCCCTGAACTTTGGAAACAAATTTTCCTCCCTCATATGAGCTCTATCATTGGGTGGTATTCTGAGGAGTGGCACAAACTTTTGATGGAAGTAATACCAGATTCTGATTTGTCCTTCACAGCTGATTTAGAACAATTCTTCCACGAGTCTTTGATCTTTTCACTAAGGCCTGATCAATTGGAGGAATTGCAAAAGTTAGAGCAAATTTATGGAGATTCATTAGATGAAAACACTAAGCTTTATGCAAAATATTTCAAGGACTGCATGGATTCAGATTCGACGAAGAAGGTTTCACCAATGCTACCCATTGCAGAGCCACCAATGACTCCTCTTCATGAAGTGAGTTCTTCCATTCCAGAGTTTGTAAAATTTGGACCCATCTTGCCTAAGAGCGCTGGGTTTGCTTCAATTATGAAATCCAAGAATGAGGCCAGAGAAGCAAGCAGCAGACTCGAAGTTAACTGTTTGCCAAAGAACCCAAACAACATTTCCAGGTGGGATGCTAAGAAGGACGTCTTGGTCGAGGAGAACGAAGACGATTCTTACTACGAACCCAATGCTTGTTCTGTGGATCTACATGATAATACATCTCATAAGTCATTATCTGTTTCCAGCCTGAACATGGTGGAGGAAGAGCAAACAGAGACTAAAACAGGACCATGTGAAGCGAAGAATCATGCACATTACTTGACAATCTTTTCACCCATCGATTCCCCTTCGTCTCCTTCCCCAAACATTTTGTCTCCAAAAATGGAGGTACGAAGTAGAAAGGAACCTAGTTTATTGCGATTAACGTCAAGCCACATTGCTGATTCCAATGTCTCAACATCTTTCCACGACTCTCCACCCTTAAGAAGTCACAGTACTAGTCCAGCAGACTCCGATAATGAAGTGATTGAGGTGGTGATGAAGAACACTCGCAAGAAGAAACATAGTGGGTCCAAAAGAATGAACTTTCAAAATGTGAACAGACAAGCTATAGAAAATAGCTCCCGATCCACTTGGGAACTTCAAGAGGGCAGCCAGAGCCACGATCAATTGTCATCATCAGACAACCTTGCTCATCGCCCTCGACTGCCAAAGGACTTTGTATGTCCAATAACTGGCCAGATTTTTTGTGACCCTGTTACACTTGAAACAGGTCAAACATATGAAAGAAAAGCAATACAGGAATGGGTAAAGAGAGGAAACACAACATGTCCTATTACACGACAGCCTCTTTCTTCATACACATTGCCGAAAACAAATTATGTTCTAAAGAGATTGATAACGTCTTGGAAAGAACAACACCCTGATCTAGCTCATGACAACTCACCAACAAACTCACTTGGCGTTTCCTGCACGAACGAGAGTCCATTGGCCTCCACTCCTTGCACAGAATTTTCAAGCTGCCCCAAAACATTTGAGTATCTAAGCCAAAAGAGTGAGAGATTAATGCAAACAACTTTATCCAAATCACTGACTAGCGGAATATCTCCAGCCACAGTCAAAACAATTATTATTGATTTGAAACCTTTAGTTTTGTGTCTGTGTACTTCAGAGAACTTGCAAGAGTGTGAAGCAGCTGTACTGGATATAGCAAGATTGTTGAAGGAATCGAAGGCTGACCCTGTGGTTCATTCCTTTTTGGCTGAGTCAACAGTTGTGAGTGGCTTTGTGGAAATTCTGTCAGCTTCTCTGGATAGAGAAGTTCTTAAAACGTCTGTTTATATTCTCTCAGAGCTAATATCTGCAGATAGAAGTGTCGTGGAGTCTCTTACAAGTGTAGACTCGGATTTTGATTGCCTGACTACTTTGCTGAAGAAAGGCCTAGCTGAAGCTGCTGTTCTTATTTGCCAGTTGAGGCCTTCATTTGTGCAGCTTTTCCGTCACAACCTAATACCATCTCTGCTTCAGATAATCCTGCAAAAAAATGGAGACTTGGATGATCTTCAATTTGTAATGGAGCCGAAGGATGGTGCAACAGAGCTGCTTGAGCAAATTTTGACGGGAGGGGATGAAAATAGTAGCTCTCTAAATGCTTTAGCTGTAATTTCTGCAAATGCAATTCCTGCCTTAATCAAGTGTTTGAACGGGCAGACTGTGAGAAGGTCAACAGTGAACATACTTTTATGTTGCATGCGAGCTGATAAAAGTTGCAGAAGCATAATAGCTTACAGAATTGAACCCACTGCCATACTCGAATTATTTCACGTAGGAAATGATGGCGAAAGAAGCGTCTGCGTAGATTTCCTCTCGGAGCTGGTTCAGTTAAACAGGAGGACATTATGCAATAACATGTTACAGAAAATTAGAGATGGAGGAGCATTTAGTACCATGCATGCGCTTCTTTTGTATCTTCAAATGGCTCCTATTGAACAGCAAACTTCCTCTGCTTCTCTTCTCCTGCAGTTGGATCTCCTGGTCGAGCCCCGGAAAATGAGCATTTACCGGGAAGAAGCTATAGATAGTCTTACTGAATCCATTCAGAGAAAGGACTTTGCTAATAGTCAAATGATCGCTTTGGATGCCTTGATATCTCTGACAGGGCGTTTCACTCCCTCAGGAAGGTCATACACCGAAGCCTGGTTACTTAAGCTTGCAGGGTTTGATCAACCTTACAATTCTATGATGAAGGCAGAGCGACTCAGTGGACATGGTAAAGATTTTGTCGAGACAATGGAAGAGGAAGAAAAAGCTCAACAAATTTGGGAAAAAAGGTTATGCCTGGTGCTCTGCAGCCATGACAAAGGCTCCATTTTCAAAGCATTGGGGGAAACCTTAAAGAGTAAGTCTGTTGAGCTGGAGAAATCAAGTCTTCTAATTGCAACCTGGCTCTGCCACATGCTTTCATTTCTTCCTGACATCGGTGCACATGAAACTGCTCACAAGTCCTTCCTTCATCAACTCATCAATGTTCTTCAATCGTCGAAAAATCAGGAAGAGAGAATATTAGCGACCCTTGCTCTGAAAACATTTATAAATGATCCAGCTGCACTTGAAGAACTGGGGGTGCATGCCAAAAGCATTTACAAAATCTTGGGAAAGATTAGGAGGAAAGCAGTAGTTGCAACTGATATATTAAAAGCCTTGATCACTTTGCCATCTGTTAATGTGGCGGAGCTCTGGCAATATACTGATGTTGCAGAGCTAGACTCGTGCATTAATGGAGAAGTTCTGGCCTTGATTCACCTTAAAGGTTTTCTTCTAAGTGGTCATTCTGATGGAACCATCAAGGTTTGGGGTGCAGGGAAGAGAACATTGAAGCTGGTTCAAGAAGCTCATCAACACACAAAAGCAGTAACATGCCTCAATGCCTCGACTTCTGGTGACATAGTTTACAGCGGTTCACAGGACAAAACAATTCGGGTCTGGGCAGTCAAACATGAAGAAATTCAATGCATTCAAGTCCACGACATGAAAGAGGCAGTACTCAACTTGACAGCCAATGTTAATGTAGCATGCTTTATCTCTCAAGGAGGAGTTAAGGTCTATAGCTGGCATGGGCTTCCAAAGCAGATAACTTTCAACAAATATGTGAAGTGCTTAACAATGTCAGAAGATAAACTGTATTGTGGCTGCTCGGACAGTATTCAGGAGGTGGATTTGTCGACACACACATCAACTGTATTCTATGCTGGAATTAGAAAATTATTGAGCAAGCAAACCATCTATTCCTTGCAAATTCATGATGGTCATCTCTATGCATGTGGTTCTTCTGTCGACGGAATAGCCGGAAAGATATTCTCCCTCTCTACCAAGGAAGTAGTAGGATCATTCTCAACCAGCATTGACATCCATAACATAGCCATAACCAGCGATTGCGTATTTACATCAACAAAAAGTGGAATCATAGAGCTATGGCAAAGAGAGAAATTTTCAAAAATGAATTCCATTAAAAAGGGTGGAGTTGGACATGCAAAAATTACATCCTTGACGACAGATTCGGACGGGGGATTGCTTTTCGTTGGTTCCTCAGATGGAAATATTCAGGTTGGCGCTTGA 4467 41.95 MAGNFGFDMDQRDIDSFLNTTIDGFIESRLLDKQKRTQQKEQCAERLAAEDGSSDKDEEVRYSDQAVLANLDWGIEALEEAIDTSNIETKLARLNHAEKMLQVCALLNSKDKTAGIPNFYLSAWAHLNLSYLCKLRGNLQNSVLHVLEMFSVDPFFSRIDFAPELWKQIFLPHMSSIIGWYSEEWHKLLMEVIPDSDLSFTADLEQFFHESLIFSLRPDQLEELQKLEQIYGDSLDENTKLYAKYFKDCMDSDSTKKVSPMLPIAEPPMTPLHEVSSSIPEFVKFGPILPKSAGFASIMKSKNEAREASSRLEVNCLPKNPNNISRWDAKKDVLVEENEDDSYYEPNACSVDLHDNTSHKSLSVSSLNMVEEEQTETKTGPCEAKNHAHYLTIFSPIDSPSSPSPNILSPKMEVRSRKEPSLLRLTSSHIADSNVSTSFHDSPPLRSHSTSPADSDNEVIEVVMKNTRKKKHSGSKRMNFQNVNRQAIENSSRSTWELQEGSQSHDQLSSSDNLAHRPRLPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWVKRGNTTCPITRQPLSSYTLPKTNYVLKRLITSWKEQHPDLAHDNSPTNSLGVSCTNESPLASTPCTEFSSCPKTFEYLSQKSERLMQTTLSKSLTSGISPATVKTIIIDLKPLVLCLCTSENLQECEAAVLDIARLLKESKADPVVHSFLAESTVVSGFVEILSASLDREVLKTSVYILSELISADRSVVESLTSVDSDFDCLTTLLKKGLAEAAVLICQLRPSFVQLFRHNLIPSLLQIILQKNGDLDDLQFVMEPKDGATELLEQILTGGDENSSSLNALAVISANAIPALIKCLNGQTVRRSTVNILLCCMRADKSCRSIIAYRIEPTAILELFHVGNDGERSVCVDFLSELVQLNRRTLCNNMLQKIRDGGAFSTMHALLLYLQMAPIEQQTSSASLLLQLDLLVEPRKMSIYREEAIDSLTESIQRKDFANSQMIALDALISLTGRFTPSGRSYTEAWLLKLAGFDQPYNSMMKAERLSGHGKDFVETMEEEEKAQQIWEKRLCLVLCSHDKGSIFKALGETLKSKSVELEKSSLLIATWLCHMLSFLPDIGAHETAHKSFLHQLINVLQSSKNQEERILATLALKTFINDPAALEELGVHAKSIYKILGKIRRKAVVATDILKALITLPSVNVAELWQYTDVAELDSCINGEVLALIHLKGFLLSGHSDGTIKVWGAGKRTLKLVQEAHQHTKAVTCLNASTSGDIVYSGSQDKTIRVWAVKHEEIQCIQVHDMKEAVLNLTANVNVACFISQGGVKVYSWHGLPKQITFNKYVKCLTMSEDKLYCGCSDSIQEVDLSTHTSTVFYAGIRKLLSKQTIYSLQIHDGHLYACGSSVDGIAGKIFSLSTKEVVGSFSTSIDIHNIAITSDCVFTSTKSGIIELWQREKFSKMNSIKKGGVGHAKITSLTTDSDGGLLFVGSSDGNIQVGA 1488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2266431 2272302 + Bpe008186.1 Bpe02g00344 98493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00344 1488 CDD RING-Ubox_PUB 524 566 IPR045210 -
Bpe02g00344 1488 MobiDBLite consensus disorder prediction 395 409 - -
Bpe02g00344 1488 MobiDBLite consensus disorder prediction 434 458 - -
Bpe02g00344 1488 Gene3D - 1218 1488 IPR015943 GO:0005515
Bpe02g00344 1488 ProSiteProfiles U-box domain profile. 519 594 IPR003613 GO:0004842|GO:0016567
Bpe02g00344 1488 SMART Ubox_2 523 587 IPR003613 GO:0004842|GO:0016567
Bpe02g00344 1488 Pfam WD domain, G-beta repeat 1249 1279 IPR001680 GO:0005515
Bpe02g00344 1488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 501 600 IPR013083 -
Bpe02g00344 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1486 - -
Bpe02g00344 1488 SUPERFAMILY WD40 repeat-like 1221 1486 IPR036322 GO:0005515
Bpe02g00344 1488 Pfam U-box domain 521 591 IPR003613 GO:0004842|GO:0016567
Bpe02g00344 1488 SMART WD40_4 1407 1443 IPR001680 GO:0005515
Bpe02g00344 1488 SMART WD40_4 1446 1488 IPR001680 GO:0005515
Bpe02g00344 1488 SMART WD40_4 1241 1280 IPR001680 GO:0005515
Bpe02g00344 1488 SMART WD40_4 1198 1236 IPR001680 GO:0005515
Bpe02g00344 1488 MobiDBLite consensus disorder prediction 491 516 - -
Bpe02g00344 1488 Gene3D - 666 940 IPR011989 -
Bpe02g00344 1488 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1486 - -
Bpe02g00344 1488 MobiDBLite consensus disorder prediction 491 514 - -
Bpe02g00344 1488 SUPERFAMILY ARM repeat 663 1157 IPR016024 -
Bpe02g00344 1488 MobiDBLite consensus disorder prediction 434 456 - -
Bpe02g00344 1488 MobiDBLite consensus disorder prediction 395 421 - -
Bpe02g00344 1488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1248 1279 - -
Bpe02g00344 1488 SUPERFAMILY RING/U-box 516 592 - -
Bpe02g00344 1488 ProSiteProfiles Trp-Asp (WD) repeats profile. 1248 1279 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00344 - - - hbr:110673768 1806.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00344 Bpe-Chr2:2266431 Bpe08g00483 Bpe-Chr8:3134698 2.19E-14 dispersed
Bpe02g00344 Bpe-Chr2:2266431 Bpe08g01367 Bpe-Chr8:14743875 1.50E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00344 Bpe_Chr02 FPKM 0.283828 0.0 6.623426 2.972957 1.953516 1.80166 0.786921 0.23567 0.458669 0.0