Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00386 ATGTGCTTGGAGCTTGAGAAATCTATTTATAGAATCTCACAGATATTATCAAAAAGTGAATTAGCTAGACCAAAATGCAAAGCTGCAACACATGCATTATCTTCATTGCATATTGCATTGGAAAAAGCCAGGCAACTTATTCAGCTCTGTTCAGATTCTAGCAAACTTTGCCTTGCGATTACAGCAGATAAAATTCTGCTAAGATGCCAAAAAGTACACAGCAATATGGAAGTATGCTTGTGTCAAGTGCAGAAGGAGGTCCCGTCCTTAGCTGCTAAGATATGTAGCATTATGGTGGATGTTAGGTCGGCCAATTTTTCATTAAACCCTGATGAAGTTGAGGCTGGGATGGTTTTGCGAAGACTGCTTCGGCAGGATATATCTCCATCCAATACATTTAACAGTTTAGAATTTGAAGTTATTCAAGTTGCTGCTCTAAAGCTGAACCTAATTTCAAGCAATTCCATTTTGATAGAGAAAAAGTCCATTCAAGAAGAACTCGAGAAATCTCATTGTAAAGAGCAAAAGAATAAGAAGAAAATCTTGAAATACTTTCTGTATCTTTTAAGGAAGTATGATGAATTACTTGTTCAACAACACAATGGGAGCGTTGAGCCACGACCATCAACAGCAAGTGTGCAGGTGAAAAGTCAAGTTTGTACCTCTGAAACTAGTATCCCAGAACCTCCAGGGGAATTTAAATGCCCCATTTCTGGTAGTTTGATGCACGATCCTGTGATTATTTCATCTGGTCGGACATTTGAACGAATGTGGATTCAGAGGTGGATAGACGATGGTAATACAACTTGCCCAATAAGTGGTACAAAGCTAGAGGATTTGTTAATGGTTCCAAACTCAGCAATAAAATGCCTCATTTCTGGATGGTGTAGGAGATATGAGATTACAATTCCTGACCCTTGCTTACAACCAATACCTGCTTTGTTTCTTCCCTCTAATATTTCACATTCTAGTTCAATGAATAGTTTAGGCTGTTGTCAGAGTGACTTGGACCGTCAAACTAGCAATGTGTCATCTTGCTCTTCAAACATGAATTGTGATGCAGGTTCTTCAGATGAAAAATCTCAAAGATTTCAACAGTTTGTCAGTGCCTGCACTGTTTTAAATTTTGTTTCTTCATGTGATGCGCCATCATCGTGGGCATCTCAATGCAAAGCAGTCTATAATTTGAGAGAGCAGCTTGAGGACAATGAAGGAGCATGCCATTCAACAGTTTCTGTATGCATTGCCAAGCCAGTAATTACCTTTTTGAAAAATGCCCTTGATTTAGGTGATGTAGAAGCACAAAGAGCTGGAACCGAGCTCCTTCTGGCCATCATGAGTAACAACAGAGATGAATTACTTGACCTGGATGAAGATGAAGTTCTTGTCCTCGCAGCATTTCTGGATTCTGATATGGCTGGAAAAAACCTTGCAGTCTTGGAAATTTTGTCTTGGCAACCGAAATTCAAATCTTTGATGGTGGCTTCTGGTCTTCTTCCCCTCATCTCAGGAGTTTTAAACGCTGAAGTAGTTGAATCTCGTGTTCTAGCTTTGAAGATACTTAACAACCTTTCACGCAACTGTAGCATGGAGTACCATTCGGCATATGTGGAGTATATTCCAAAACTGATTCAATTTATGGGGGATCCCGTTATTGCGAATTCGTGCATTGAGATAATAAAAAATCTGTGTGATTCAGGAGGGAGAAGTGGACTGTACAAAGCAAGTTCATGCATCACTGAAATTGCTCGATTCCTCGTAACTGGGACGAAGGTACAAGAATATACAGCTGATGTTCTCCATTCTCTGTGTTATGAACGAGAGGAATACATCCCATTAGTTGTAAAAGAGAATGTATTTCAACCTCTGGTCCATATGTCTAAAAATGGGAGTTACAGAGGAAAAGTGATTGCCGCAGAATTGCTCCAGCTCTTGGGACATACCTCTAATGGTGCTGTTTCAGAATATTCATTTTCACATCCTCAAGTTGGTTTGGGCAGAGACGTCCCCTCCAATTCTATAATCTGCAGTAAGGAAAACAAATCGGTTTTCAAGAAACTTGGAGTTCTGCAGATGAAGCTGCCTACATATTCAAAACCTATCAATTAG 2109 39.69 MCLELEKSIYRISQILSKSELARPKCKAATHALSSLHIALEKARQLIQLCSDSSKLCLAITADKILLRCQKVHSNMEVCLCQVQKEVPSLAAKICSIMVDVRSANFSLNPDEVEAGMVLRRLLRQDISPSNTFNSLEFEVIQVAALKLNLISSNSILIEKKSIQEELEKSHCKEQKNKKKILKYFLYLLRKYDELLVQQHNGSVEPRPSTASVQVKSQVCTSETSIPEPPGEFKCPISGSLMHDPVIISSGRTFERMWIQRWIDDGNTTCPISGTKLEDLLMVPNSAIKCLISGWCRRYEITIPDPCLQPIPALFLPSNISHSSSMNSLGCCQSDLDRQTSNVSSCSSNMNCDAGSSDEKSQRFQQFVSACTVLNFVSSCDAPSSWASQCKAVYNLREQLEDNEGACHSTVSVCIAKPVITFLKNALDLGDVEAQRAGTELLLAIMSNNRDELLDLDEDEVLVLAAFLDSDMAGKNLAVLEILSWQPKFKSLMVASGLLPLISGVLNAEVVESRVLALKILNNLSRNCSMEYHSAYVEYIPKLIQFMGDPVIANSCIEIIKNLCDSGGRSGLYKASSCITEIARFLVTGTKVQEYTADVLHSLCYEREEYIPLVVKENVFQPLVHMSKNGSYRGKVIAAELLQLLGHTSNGAVSEYSFSHPQVGLGRDVPSNSIICSKENKSVFKKLGVLQMKLPTYSKPIN 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2517191 2520649 - Bpe008227.1 Bpe02g00386 98535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00386 702 Gene3D - 335 659 IPR011989 -
Bpe02g00386 702 CDD RING-Ubox_PUB 233 274 IPR045210 -
Bpe02g00386 702 PANTHER U BOX DOMAIN-CONTAINING 5 659 - -
Bpe02g00386 702 Pfam U-box domain 230 297 IPR003613 GO:0004842|GO:0016567
Bpe02g00386 702 SMART Ubox_2 232 295 IPR003613 GO:0004842|GO:0016567
Bpe02g00386 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 302 IPR013083 -
Bpe02g00386 702 ProSiteProfiles U-box domain profile. 228 302 IPR003613 GO:0004842|GO:0016567
Bpe02g00386 702 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 659 - -
Bpe02g00386 702 SUPERFAMILY ARM repeat 475 652 IPR016024 -
Bpe02g00386 702 SUPERFAMILY RING/U-box 221 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00386 - - - qlo:115974350 518.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00386 Bpe-Chr2:2517191 Bpe13g01504 Bpe-Chr13:20431440 2.06E-71 dispersed
Bpe13g00442 Bpe-Chr13:11960303 Bpe02g00386 Bpe-Chr2:2517191 1.01E-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g956 Blo01g01566 . . . Bpe02g00386 . . Bma01g02326 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017270 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00386 Bpe_Chr02 FPKM 22.425034 18.667255 45.262646 44.003071 1.925183 2.919653 2.317204 14.639118 15.122995 15.033107