Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00392 ATGGCGGGAGATGTCCAATGCTGTGAAACGGAATTCTTTCTGTACATTGTTGTGGTTATTGGGTTGGTGGTTTTCGCCGGATTAATGGCCGGACTTACTTTGGGTCTAATGTCTTTGGGTCTCGTCGACCTTGAGGTTCTGATCAAGTCCGGCCGACTTCAAGATCGGCTCTACGCTGCAAAAATATTCCCTGTGGTGAAGAACCAGCATCTTCTTCTTTGCACACTTTTGATCGGAAACTCGTTAGCAATGGAGACTCTTCCTATATTCTTGGATAAGATGGTGCCTCCATGGGCAGCAATTCTCTTATCAGTCACACTAATCCTCATGTTTGGAGAGATCTTGCCTCAAGCCATTTGTACTCGATATGGATTGAAAGTCGGAGCAATGATGGCTCCGTTTGTTCGTGTTCTTCTCCTGCTTTTCTTCCCCATTTCCTATCCCATCAGTAAGGTTTTAGACTATATGCTGGGAAAGGGCCACACTGTTCTTTTAAGACGAGCAGAGCTCAAGACTTTCGTGCATTTTCACGGCAACGAGGCTGGAAAAGGTGGAGATTTAACACGCGATGAGACGACCATCATAGCCGGTGCCCTTGAATTGACTGAAAAAACAGCAAAAGATGCCATGACTCCAATATCAAATGCATATTCCCTCGACCTCGACACAATTCTTGATTTGAAAACTCTCAATACAATCATGTCTAAGGGTCATAGTAGAGTTCCTGTTTATTCGGGCAGGCCTACGAACATCATCGGACTTGTTCTGGTTAAAAATCTACTGTCAGTTGACCCTGCAGATGCTCTAATCCTCAGAAAAATGATCATAAGAAAGATTCCTCGAGTGTCTGAAGACATGCCTCTCTATGATATTCTAAACGAATTCCAGAAAGGGCACAGTCATATTGCTGTTGTGTTTAAGGATCTGAATGAGAAGAAGAGCAAAGCACAACAAGCTTATAATTCAAAGAACAGTCGTAAAACACAGACGAGCCAATCCGAGAAGGCAGTACATGATGCTAATTTGGCTTCTTTGAGTGTGAAAGGAGATCAACCAATGAAGAAAACTCTACCCGCTCCTGCATCTCTCAGAAAACGACATAGAGGATCCTCATTTTGCATTTTGGATATCGAAAATGCTCCGATTCCTGAGTTCCCGGCTAATGAAGAGGTTGTCGGTGTAATAACCATGGAAGATGTTATAGAAGAGCTCCTTCAGGAGGAGATTTTGGACGAAACTGATGAGTATGTGAATATCCACCACAGGTATAGTTGA 1275 43.37 MAGDVQCCETEFFLYIVVVIGLVVFAGLMAGLTLGLMSLGLVDLEVLIKSGRLQDRLYAAKIFPVVKNQHLLLCTLLIGNSLAMETLPIFLDKMVPPWAAILLSVTLILMFGEILPQAICTRYGLKVGAMMAPFVRVLLLLFFPISYPISKVLDYMLGKGHTVLLRRAELKTFVHFHGNEAGKGGDLTRDETTIIAGALELTEKTAKDAMTPISNAYSLDLDTILDLKTLNTIMSKGHSRVPVYSGRPTNIIGLVLVKNLLSVDPADALILRKMIIRKIPRVSEDMPLYDILNEFQKGHSHIAVVFKDLNEKKSKAQQAYNSKNSRKTQTSQSEKAVHDANLASLSVKGDQPMKKTLPAPASLRKRHRGSSFCILDIENAPIPEFPANEEVVGVITMEDVIEELLQEEILDETDEYVNIHHRYS 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2546482 2548918 + Bpe008233.1 Bpe02g00392 98541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00392 424 Pfam Cyclin M transmembrane N-terminal domain 19 186 IPR002550 -
Bpe02g00392 424 Gene3D - 330 412 IPR046342 -
Bpe02g00392 424 CDD CBS_pair_CorC_HlyC_assoc 205 305 IPR044751 -
Bpe02g00392 424 MobiDBLite consensus disorder prediction 317 336 - -
Bpe02g00392 424 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 2 422 - -
Bpe02g00392 424 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 2 422 IPR045095 GO:0010960
Bpe02g00392 424 Gene3D - 189 329 IPR046342 -
Bpe02g00392 424 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Bpe02g00392 424 SUPERFAMILY CBS-domain pair 194 406 IPR046342 -
Bpe02g00392 424 Coils Coil 306 326 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00392 K16302 CNNM; metal transporter CNNM - cpap:110816688 602.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00392 Bpe04g00212 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00392 Bpe-Chr2:2546482 Bpe03g00157 Bpe-Chr3:2027785 1.43E-150 dispersed
Bpe06g00124 Bpe-Chr6:2033543 Bpe02g00392 Bpe-Chr2:2546482 7.39E-160 transposed
Bpe12g00728 Bpe-Chr12:12789496 Bpe02g00392 Bpe-Chr2:2546482 1.73E-170 transposed
Bpe15g00052 Bpe-Chr15:6493916 Bpe02g00392 Bpe-Chr2:2546482 2.32E-167 transposed
Bpe02g00392 Bpe-Chr2:2546482 Bpe04g00212 Bpe-Chr4:1456776 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g942 . Blo12g00909 Bda01g00530 Bda03g00259 Bpe02g00392 Bpe04g00212 Bma04g00208 Bma01g02320 . . Cma01g01908 . Car01g01490 . . . . . . . . . . . . . . . . . . . . Cone17ag1339 . Lsi04g01664 Csa03g04207 Chy04g00511 . . . . . . . . . . Cmo01g01971 . . . . . . Cpe02g00128 . . . . . . . Cla05g01942 Cam05g2085 Cec05g2098 Cco05g2152 Clacu05g2080 Cmu05g1955 Cre05g2075 . . . Cme04g00566
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009053 2 3 1 2 2 1 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00392 Bpe_Chr02 FPKM 3.908982 3.859184 15.333846 15.008561 7.4488 5.569583 6.032049 27.128527 28.5683 26.198452
Bpe02g00392 Bpe_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0