Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00398 ATGAGAAAGCTGTGTCCTAATTTTGATAACTTAGATGGATTGGACACTGTTCTTGAGGTGCCCATTCCGGAGGAAATGTTCATCAACATGGGCAACAATGCTGCCCATCGATGGCAGAATTTGCGAGCTTTGATGAAAGCTCCATCGGCCGATAAATCTTCTCATCTATCCGCAGCTTCAAACAACGAGTTCATGGCATTGCTCAAGCTCGTCGGCTCCCCTTTAATCCCGTTTCAAGTTCATTTAGACCACACTCTAACGCGGCCCATCAAAGATTGCTCCATCGAAGCTTCGACGGCAAAATACATAGTACAACAATACGTAGCTGCTACCGGAGGGCCGGGGGCATTAAATTCAGTGAACAGTATGTATGCAGTGGGGCAAGTGAAGATGATTGGATCTGCAATGCAACGAGGCGACGACAGCGTCCATGCAAGAGGCAAGCAAGAAGTCGGCGGGTTCGTTGTTTGGCAAAAGAATCCCGATTTGTGGTGCCTCGAATTGGTCGTGTCCGGCTTCAAGATCACTGCCGGCAGTGACGGCAAAGTCGCTTGGAGCCAATCCTCCTCACAGCCTAGTCATGCTAACAAAGGCCCCCCAAGACCTCTTCGCCGGTTTTTTCAGGGATTGGATCCGAGGTACATCGCCAACTTGTTCCTTGACGCCGTCTGCATCGGAGAGAAAGCTATAAACAACGAAGACTGCTTTATACTGAAGCTCGAAACAGATTCAGCCTTCCTCAAAGCACAGAGCACACCCCACGTAGAAATCGTGAACCACACGATCTGGGGATACTTCAGCCAGCGGACGGGATTACTCGTCCAATTCGAGGACACGAAGCTGGTGAGAATGAAAGCCGTGAAGGGTAACGACAGCGTTTTCTGGGAAACGAGCATGCAATCGATAATCGAAGATTACAAGTACGTCGAGGGGATAAACATAGCTCACGCAGGGACGACGACGGCGAGATTGTACAGATACGGGGAGGCGCATAATCACAAGAGGAAGATCGAGGAGAGTTGGAGAATCGAAGAGGTGGATTTCAACATTTGTGGGTTGTCGATGGAGTGTTTTTTGCCTCCTGCTGATATGAAGAGAGATGAAAACGGGGGAGATCAACAGGTGGGAGAAAGCTAG 1137 49.52 MRKLCPNFDNLDGLDTVLEVPIPEEMFINMGNNAAHRWQNLRALMKAPSADKSSHLSAASNNEFMALLKLVGSPLIPFQVHLDHTLTRPIKDCSIEASTAKYIVQQYVAATGGPGALNSVNSMYAVGQVKMIGSAMQRGDDSVHARGKQEVGGFVVWQKNPDLWCLELVVSGFKITAGSDGKVAWSQSSSQPSHANKGPPRPLRRFFQGLDPRYIANLFLDAVCIGEKAINNEDCFILKLETDSAFLKAQSTPHVEIVNHTIWGYFSQRTGLLVQFEDTKLVRMKAVKGNDSVFWETSMQSIIEDYKYVEGINIAHAGTTTARLYRYGEAHNHKRKIEESWRIEEVDFNICGLSMECFLPPADMKRDENGGDQQVGES 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2584732 2586111 - Bpe008239.1 Bpe02g00398 98547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00398 378 Pfam Protein of unknown function (DUF620) 123 361 IPR006873 -
Bpe02g00398 378 PANTHER LIPASE 1 367 IPR006873 -
Bpe02g00398 378 PANTHER DUF620 FAMILY PROTEIN (DUF620) 1 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00398 - - - qsu:112038327 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00398 Bpe-Chr2:2584732 Bpe05g00485 Bpe-Chr5:19089341 5.19E-103 dispersed
Bpe15g01260 Bpe-Chr15:21077845 Bpe02g00398 Bpe-Chr2:2584732 1.68E-154 transposed
Bpe10g00114 Bpe-Chr10:1974529 Bpe02g00398 Bpe-Chr2:2584732 2.22E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g927 Blo01g01557 . . . Bpe02g00398 . . Bma01g02313 . . Cma01g01899 . Car01g01482 . . . . . . . . . . . . . . . . . . . Cone7ag1817 . . . Csa03g04197 Chy04g00522 . . . . . . . . . Sed13g1633 Cmo01g01963 . . . . . . Cpe02g00135 Bhi09g02158 Tan01g4952 Cmetu04g2517 . Hepe01g1669 Mch11g0172 . Cla05g01952 Cam05g2098 Cec05g2107 Cco05g2163 Clacu05g2090 Cmu05g1966 Cre05g2084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012139 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00398 Bpe_Chr02 FPKM 0.0 0.0 1.29264 0.0 1.167154 0.0 0.0 1.372246 0.0 2.670292