Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00407 ATGGCCCTGGAAACTCCATTGGTGAACAACCAGAACGACATCGGGAATGGAGGAGAAGGTGAGAAGGCGGCGTGTTTGGCGGTCAAAGAGTTTGGGTACGAGTCGAAAAGGTTATGGAAGATCGGCGGGCCGGCTATCTTCACGGCCATCTGCCAGTACTCGCTCGGCGCGCTCACTCAGACTTTCATTGGTCAGGTTGGAGAGCTTGAGCTGGCGGCTGTTTCCGTTGGAAACTCCGTCGTCGCCGGTTTCGCCTTCGGCATCATGGTACAAGATCTTTCTTTATTTATGCATTTGTTTGATCAACAACAGTTGGGAATGGGAAGTGCGTTAGAGACGTTATGTGGGCAGGCCTACGGCGCAGGGAAGATTAGGATGCTAGGAGTGTACATGCAGAGATCATGGGTTATTCTGCTGACAACAGCCTGTCTTTTGGTTCCAATCTACGTATTCTCTCCTCCTATTCTCCATCTCATCGGAGAGACCACTCCGATATCCAAGGCTGCAGGAAAATTTGCTCTATGGATGCTTCCACAATTATTTGCATACGCGTTGAATTTTCCGATACAGAAGTTTCTTCAGTCACAGAGTAAAGTGATGGTGATGGCCTGGGTTTCAGCGGTGGTGCTAGCGTTACACGCCTTCTTCAGCTGGTTGCTGATATTGAAACTTGGCTGGGGCTTGACCGGAGCCGCCATCACGCTCAACACATCGTGGTGGCTCATCGTGATCGGACAGTTGCTCTACATTTTCATTACCAAGTCAGACGGTGCTTGGAGTGGCTTCTCGTGGCTCGCCTTTTCAGACTTGTATCCCTTCGTCAAGCTTTCTCTTGCGTCTGCTATAATGCTTTGCTTGGAATTCTGGTACTTGATGGTGCTGGTGGTTATAACAGGACGTTTGCCCAATCCTGTAGTTCCCGTCGACGCCATCTCCATTTGTGTGAGAATCTCTAATGAACTAGGAGCCGGGAAAGCTCAGGCTGCAAAATTTGCCGTGATCGTAGTCTCCCTGACGACGGTGGCGATCGGAGTGGTCTGTATGACCGTCGTGCTAAGTACAAGAGACTATTTCCCATATCTTTTTACGAGTAGTGAAGCTGTCGCTAAAGAAACCACAAAGCTAGCCACTTTACTCGGATTCACAGTGCTTCTCGGCAGCCTGCAGCCAGTTTTATCCGGGGTCGCCGTCGGAGCGGGATGGCAATCGATCATTGCGTATATTAACGTCGGATGCTATTACGTTGTCGGGTTACCGGCCGGAATACTCATGGGATTCAAGTTTGATCTCGGCGTCGAGGGTATTTGGTCGGGGATGATCGGAGGACTTTGTTTACAGACCGTAATTCTGGTCGTGCTTACGGTACTAACAAACTGGAATAAAGAGGTAACTGGGTCTTCTACTATGGCTCTGGTAACGCCATTGATAAATAACCAGAGCGACCTTCTAAATGGAGAAGAACGCGAGAAGCCTGCATGTTTGGCGATCAAAGAGTTCGGATACGAGTCAAAGAGGCTATGGAAGATCTCCGGCCCGACCATGTTCATGACGTTGAGCCAGTTCTCACTCGGTGTGGTCACCCAGGCTTTTACCGGTCAGGTGGGCGATCTCGAGCTCGCAGCTTTTTCCGTCGAGAACTCCGTTATCGCCGGCTTGGCCTTCGGAATCATGTTGGGGATGGGGAGTGCGCTGGAGACATTAAGCGGGCAGGCGTATGGTGCGGGCAATATCAGGATGTTAGGCGTGTACATGCAGAGATCATGGATAGTTTTGTTGACCACGGGCTGTCTACTGGTTCCAGTCTATGTCTGGTCCTCTCCCATTCTCCATCTCATCGGAGAGACGACTGAGATTTCGAAAGCTGCAGGAAAATTCGCTGTTTGGATGATTCCGCAATTATTCGCATACGCAATGAATTTTCCGATACAGAAGTTTCTTCAATCGCAGCGGAAAGTGATAGCGATGGCCTGGATTGCCGGCGTAGTGCTGGCGTTACACGTTTTCTTCAGCTGGTTGCTGGTATTGAAACTTGGGTGGGGGTTAACCGGAGCCGCTGTTACTCTCAACTCATCGTGGTGGCTCGTAGTGATCGGAAATTTACTCTACATTTTCATCACGAAGTCGGACGGCGCTTGGAGTGGCTTCTCGTGGCTGGCGTTTTCCAATTTGTACGAGTTTTTCAAGCTTTCTCTCGCATCTGGTGTAATGGTTTGCTTACAGTATTGGAACTTGATGATATTGGTAGTGATAACTGGGCGTTTGTCCAATCCTCTAGTCCCCGTCGATGCCATCTCCATTTGGATGGGTTACCATGATATTTTATGGCTTCAACGCTGCTATAAGGTGCTGTCTTCCGAATCTAAAACTTTCTGCATAAAACAAGCTTTCGTTAAAAGTATCACTTTAAATGGTATTTGGTCAGGGATGATCGGAGGAATTGGTCTACAGACATTGATTTTGGTTGTGCTTACGCTGAGGACTAACTGGAACAAAGAGGTCACTCTCGGAGCAATCTATTCGAGTAATTTTACATAA 2535 48.88 MALETPLVNNQNDIGNGGEGEKAACLAVKEFGYESKRLWKIGGPAIFTAICQYSLGALTQTFIGQVGELELAAVSVGNSVVAGFAFGIMVQDLSLFMHLFDQQQLGMGSALETLCGQAYGAGKIRMLGVYMQRSWVILLTTACLLVPIYVFSPPILHLIGETTPISKAAGKFALWMLPQLFAYALNFPIQKFLQSQSKVMVMAWVSAVVLALHAFFSWLLILKLGWGLTGAAITLNTSWWLIVIGQLLYIFITKSDGAWSGFSWLAFSDLYPFVKLSLASAIMLCLEFWYLMVLVVITGRLPNPVVPVDAISICVRISNELGAGKAQAAKFAVIVVSLTTVAIGVVCMTVVLSTRDYFPYLFTSSEAVAKETTKLATLLGFTVLLGSLQPVLSGVAVGAGWQSIIAYINVGCYYVVGLPAGILMGFKFDLGVEGIWSGMIGGLCLQTVILVVLTVLTNWNKEVTGSSTMALVTPLINNQSDLLNGEEREKPACLAIKEFGYESKRLWKISGPTMFMTLSQFSLGVVTQAFTGQVGDLELAAFSVENSVIAGLAFGIMLGMGSALETLSGQAYGAGNIRMLGVYMQRSWIVLLTTGCLLVPVYVWSSPILHLIGETTEISKAAGKFAVWMIPQLFAYAMNFPIQKFLQSQRKVIAMAWIAGVVLALHVFFSWLLVLKLGWGLTGAAVTLNSSWWLVVIGNLLYIFITKSDGAWSGFSWLAFSNLYEFFKLSLASGVMVCLQYWNLMILVVITGRLSNPLVPVDAISIWMGYHDILWLQRCYKVLSSESKTFCIKQAFVKSITLNGIWSGMIGGIGLQTLILVVLTLRTNWNKEVTLGAIYSSNFT 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2644526 2650679 + Bpe008248.2 Bpe02g00407 98556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00407 844 CDD MATE_eukaryotic 34 463 IPR045069 GO:0042910|GO:1990961
Bpe02g00407 844 PANTHER PROTEIN DETOXIFICATION 33 22 467 - -
Bpe02g00407 844 PANTHER PROTEIN DETOXIFICATION 33 492 769 - -
Bpe02g00407 844 PANTHER MULTIDRUG RESISTANCE PROTEIN 22 467 - -
Bpe02g00407 844 PANTHER MULTIDRUG RESISTANCE PROTEIN 796 836 - -
Bpe02g00407 844 PANTHER MULTIDRUG RESISTANCE PROTEIN 492 769 - -
Bpe02g00407 844 PANTHER PROTEIN DETOXIFICATION 33 796 836 - -
Bpe02g00407 844 Pfam MatE 313 421 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe02g00407 844 Pfam MatE 44 219 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe02g00407 844 Pfam MatE 512 672 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00407 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:109009822 695.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00407 Bpe-Chr2:2644526 Bpe11g01788 Bpe-Chr11:14196233 1.15E-105 dispersed
Bpe14g00469 Bpe-Chr14:4199550 Bpe02g00407 Bpe-Chr2:2644526 1.02E-11 dispersed
Bpe02g00407 Bpe-Chr2:2644526 Bpe13g00166 Bpe-Chr13:9474872 2.60E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g873 Blo01g01550 . Bda01g00549 . Bpe02g00407 . . Bma01g02300 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1795 Cone17ag1315 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019346 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00407 Bpe_Chr02 FPKM 41.231255 45.621315 1.931385 1.486761 2.354208 4.024389 2.861561 3.502947 3.683325 3.779896