Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00421 ATGCAGTCGAGCGGCTCTGATTCGCATATGGCGCAGCAGACGGAACAGAATCAACGGCAACAATCACAGCCGCCGCTACAGCAGCCGTGGATGGCGATGCAGTATCCTGCCGCGGCGATGGTAATGCAGCACCAGATGATGCCTCCTCAGCATTACCTTTCCTCGATACCGCCGCACTACATGCCATACCATCAGTATCAGCCGCATCATTCGCTTATGCAACAAGGTCAGCAGCATCACCAGGGATCTTCGGGCGAGAACAAGACGATATGGGTCGGCGATTTGCACCATTGGATGGACGAGAATTACCTTCATACTTGCTTCGTTTCTACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAGCAGACAGGTTTATCAGAAGGCTACGGATTTGTGGAATTTTATTCCCACGCAACTGCCGAGAAAGTTCTGCAGAACTACAGTAGCATGTTTATGCCAAACACAGAACAACTTTTCCGCCTTAACTGGGCAACATTTAGCTCGGGAGAAAAGCGTTTAGATAATGGTCCTGATCTTTCTATCTTTGTAGGAGATTTAGCTGCAGATGTTACTGATATAGGTGGATATGGATCAAATGGTTCCTTTACTCATGGTTTTCAACCTGAAGTTGATTCTACAAACACAACAATATTTGTTGGAGGGCTTGATCCTAATGTCAGTGATGAAGACCTTAAGCAGCCTTTCTCTCAGTATGGCGAGATTGTCTCTGTTAAAATACCAGTTGGAAAAGGATGTGGGTTTGTGCAATTCGCCAACAGAAATAATGCCGAGGAAGCTTTACAGAAATTAAATGGAACTGTGATTGGGAAGCAAACCGTACGACTTTCTTGGGGTCGGAACCCGGCACACAAGCAGATTGATAAACTGAAGAAGAAGCTGAAACAAGAAGAGAATGTACAGAGAGCTCTGAAGAGGGCCTTCACCAGACCTTTGGGAGCTTTACCTCGTCTCCCTCCTTTCCTCCCTCCATATATGCTCGAGCTTCTAGCAGAAGTAGCTGTGTTGGAGGAGGAGATAGTTCGACTCGAACAGCAGGTTGTTCATTTTAGAAAAAAATTGTATTGTGAAGCTGTCTTTATGTCATCTTTAACAAAGATGAAAGACAATTCATCTGATTCACGTGAGCCTAAACAAGTAGAGTCCCAGCTTTTAGTTCAAAATTCCACCATTTCTACCACAAATTCGCCTTCTTTATCTGATGATTGCCTATGGAAGGAGAATCAATGCCGTGCAAATTCGACGAAGAACAACAGAGAATCCATGACTCCAAGACTTCATACAGTCAGAATTAGTGGAAAGAAACCTCCTCTTAATTATACATCAGCAATTAAGAATTTGAATACCAAGAAGCTTGATTCAGAATCGGTGACAGAAAAAGAAGAGATAGATGCAAAAAGATGCATCATTCCGTCCCAAGATGACTGTCCAAACAAGTTATCTGAAGAGATTTTGAAGTGCTTATCAAGCATTCTTTTAAGATTGTCATCGTCGAAAGAAAAAGGCACTTTGCCGACTTCAACCCACCAAGATGGCTGTCAAAAAGCAAAATATCACGATCCTTACGGAATTTTATCGAAATTTGGAACGAGAGATATCGGCCCTTATAAGAATTTATGTGTGATAGAATCTCGATCCATCAATCCAAAGCGAACAGCAAGTTCTATGTTTTTATTTCACAGATTGAGACTGCTCCTTCAGAAACTTGCTTCAGCCAATTTAAAAAATCTAACCCATCAGGAAAAGCTTGCATTCTGGATTAACATCCACAACTCCTGCATGATGAATGCATATCTAGAACATGGAATTCCAGAAACTCCTGAGATGGTCATTGTACTAATGCAGAAGGGAACAGTTTTAGTGGGTGGGCACTTGCTAAATGCTATAACCATTGAGCATTTTATCTTGAGACTACCATATCATTCGCAATACACCTTTTCAAAGAGTGCAAACAATGATGAGAAGACAATAAGAAGCATGTTTGGATTGGAATTATCTGAACCATTGGTCACATTTGCTCTGTCCTGTGGAAGCTGGTCCTCTCCCGCTGTGAGAGTGTATACTGCATCTGAGGTCGAGAACCAACTGGAAGTGGCCAAGAGAGACTACTTGCAGGCGGCAGTCGGGATTTCTCCAGAGAAATTTGGAATTCCAAAGATGTTTGAATGGTATTTGCTTGATTTTGCAAAGGATTTAGAGTCATTGCTTGATTGGTTGTGCCTTCAACTACCAAACGAACTCGAAAAAGAAGCAATTTCGTGCATGGACGGAGGTAAAAACGACCCTCTTTTTCTTTCGCAGATTGTTGAAGTAATTCCATATGATTTTAGTTTTAGGTACATCCTCTGCACATAA 2379 42.16 MQSSGSDSHMAQQTEQNQRQQSQPPLQQPWMAMQYPAAAMVMQHQMMPPQHYLSSIPPHYMPYHQYQPHHSLMQQGQQHHQGSSGENKTIWVGDLHHWMDENYLHTCFVSTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYSSMFMPNTEQLFRLNWATFSSGEKRLDNGPDLSIFVGDLAADVTDIGGYGSNGSFTHGFQPEVDSTNTTIFVGGLDPNVSDEDLKQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTVIGKQTVRLSWGRNPAHKQIDKLKKKLKQEENVQRALKRAFTRPLGALPRLPPFLPPYMLELLAEVAVLEEEIVRLEQQVVHFRKKLYCEAVFMSSLTKMKDNSSDSREPKQVESQLLVQNSTISTTNSPSLSDDCLWKENQCRANSTKNNRESMTPRLHTVRISGKKPPLNYTSAIKNLNTKKLDSESVTEKEEIDAKRCIIPSQDDCPNKLSEEILKCLSSILLRLSSSKEKGTLPTSTHQDGCQKAKYHDPYGILSKFGTRDIGPYKNLCVIESRSINPKRTASSMFLFHRLRLLLQKLASANLKNLTHQEKLAFWINIHNSCMMNAYLEHGIPETPEMVIVLMQKGTVLVGGHLLNAITIEHFILRLPYHSQYTFSKSANNDEKTIRSMFGLELSEPLVTFALSCGSWSSPAVRVYTASEVENQLEVAKRDYLQAAVGISPEKFGIPKMFEWYLLDFAKDLESLLDWLCLQLPNELEKEAISCMDGGKNDPLFLSQIVEVIPYDFSFRYILCT 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2750293 2760224 - Bpe008263.1 Bpe02g00421 98570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00421 792 PANTHER EXPRESSED PROTEIN 401 790 - -
Bpe02g00421 792 Coils Coil 334 361 - -
Bpe02g00421 792 Gene3D - 205 296 IPR012677 -
Bpe02g00421 792 Coils Coil 295 315 - -
Bpe02g00421 792 CDD RRM3_NGR1_NAM8_like 216 287 - -
Bpe02g00421 792 PANTHER EXPRESSED PROTEIN 294 398 - -
Bpe02g00421 792 SUPERFAMILY RNA-binding domain, RBD 209 291 IPR035979 GO:0003676
Bpe02g00421 792 CDD RRM1_SECp43_like 89 169 - -
Bpe02g00421 792 Pfam Protein of unknown function, DUF547 583 712 IPR006869 -
Bpe02g00421 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 282 IPR000504 GO:0003723
Bpe02g00421 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Bpe02g00421 792 MobiDBLite consensus disorder prediction 1 26 - -
Bpe02g00421 792 Pfam Leucine-zipper of ternary complex factor MIP1 293 363 IPR025757 -
Bpe02g00421 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Bpe02g00421 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 289 IPR000504 GO:0003723
Bpe02g00421 792 SMART rrm1_1 218 285 IPR000504 GO:0003723
Bpe02g00421 792 SMART rrm1_1 89 161 IPR000504 GO:0003723
Bpe02g00421 792 Gene3D - 87 167 IPR012677 -
Bpe02g00421 792 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 401 790 - -
Bpe02g00421 792 PANTHER TERNARY COMPLEX FACTOR MIP1, LEUCINE-ZIPPER-RELATED 294 398 - -
Bpe02g00421 792 SUPERFAMILY RNA-binding domain, RBD 57 167 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00421 - - - mnt:21408762 582.022
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00421 Bpe04g00192 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00111 Bpe-Chr1:649254 Bpe02g00421 Bpe-Chr2:2750293 5.71E-12 dispersed
Bpe02g00421 Bpe-Chr2:2750293 Bpe15g01284 Bpe-Chr15:21199567 2.71E-75 dispersed
Bpe04g00092 Bpe-Chr4:670395 Bpe02g00421 Bpe-Chr2:2750293 5.51E-08 dispersed
Bpe08g00085 Bpe-Chr8:471176 Bpe02g00421 Bpe-Chr2:2750293 9.71E-12 dispersed
Bpe02g00421 Bpe-Chr2:2750293 Bpe04g00192 Bpe-Chr4:1262758 5.06E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g817 . Blo12g00945 . Bda03g00225 Bpe02g00421 Bpe04g00192 . . . . Cma01g01862 Cma09g00212 Car01g01450 . . Cpe06g00146 . . . . . . . . . . . . . . . Cone4ag1558 . . . Lsi04g01584 Csa04g02384 . . . . . . . . . . Sed01g2644 Cmo01g01920 . . . . Car09g00179 . Cpe02g00164 Bhi09g03359 Tan01g4825 Cmetu07g0443 . . . . Cla05g02010 Cam05g2163 Cec05g2179 Cco05g2227 Clacu05g2155 Cmu05g2023 Cre05g2150 . . Chy07g00111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007331 0 4 1 0 1 1 3 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00421 Bpe_Chr02 FPKM 3.195724 3.553178 5.658295 5.395787 0.877231 0.650141 0.645822 0.0 0.0 0.0