Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00430 ATGGTGATAGTGGATCAGCTCAAGTCAGAGGATCCGTTGGAGATTATGATGATGATGCATCAGTCCGACAAGAATCGAGCATTTTGCTGCGCCTACAATGACATTGCTCAATTCTCACCGTCTGATTATGCTGGTGCAAGTGTCTGTGACAGCATCACAGCCGTCCCACATTGTTCAGACGGCCTTCAACCATCCTCTTATTCCTTCCTAAACTTTCCTTCTTCTTCTTTCACGAGTGCCAGCCCTCCTTTATCTACAGAGAAGCAAACGACATTTTCATCCAGGTGGGAGAGTGAATTGTCAATCGGAGAAAATGCCTTCTTCTCTTCGCCTGATTCTGGGAGACCTACTTCAACGGCAACGATGAGGGAGATGATTTTCCGAATAGCGGCTATGCAGCCGATTCACATAGACCCAGAAGCGGTAAAGCCACCGAAACGGAGGAACATGAAGATATCGAAGGACCCACAAAGCGTTGCGGCCCGGCATAGGAGAGAGAAGATAAGTGAAAGAATCAGAATTCTGCAGAGGTTGGTACCAGGTGGGACAAAAATGGATACAGCTTCCATGTTAGACGAAGCTATTCATTACGTCAAATTTTTGAAGGGCCAAGTGCAGTCGCTGGAGAGGGCTGAAGCCAGCAGGCTGACTGGTATGGGGTGCCCAATTGCAGTCTCCAATGGCGGCAGCTATTTTCCTATGGCAAGGGATTTCCCATTGCCTCCTGGAATTTAG 735 48.16 MVIVDQLKSEDPLEIMMMMHQSDKNRAFCCAYNDIAQFSPSDYAGASVCDSITAVPHCSDGLQPSSYSFLNFPSSSFTSASPPLSTEKQTTFSSRWESELSIGENAFFSSPDSGRPTSTATMREMIFRIAAMQPIHIDPEAVKPPKRRNMKISKDPQSVAARHRREKISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAEASRLTGMGCPIAVSNGGSYFPMARDFPLPPGI 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2819866 2820600 - Bpe008271.1 Bpe02g00430 98579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00430 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 235 IPR045843 GO:0003700|GO:0006355
Bpe02g00430 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 210 IPR036638 GO:0046983
Bpe02g00430 244 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 235 - -
Bpe02g00430 244 SMART finulus 158 207 IPR011598 GO:0046983
Bpe02g00430 244 Pfam Helix-loop-helix DNA-binding domain 162 201 IPR011598 GO:0046983
Bpe02g00430 244 Gene3D - 150 219 IPR036638 GO:0046983
Bpe02g00430 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Bpe02g00430 244 CDD bHLH_AtIND_like 153 209 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00430 Bpe05g00025 CCT
Bpe02g00430 Bpe05g00025 ECH
Bpe02g00430 Bpe04g00178 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00430 Bpe-Chr2:2819866 Bpe06g00258 Bpe-Chr6:13313700 5.50E-40 dispersed
Bpe02g00430 Bpe-Chr2:2819866 Bpe04g00178 Bpe-Chr4:1152051 9.76E-118 wgd
Bpe02g00430 Bpe-Chr2:2819866 Bpe05g00025 Bpe-Chr5:524999 1.81E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20873 PF00010 HLH 1.80E-06 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00430 - - tcc:18591179 239.58