Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00441 ATGCACTGCCTTTTAATGGTGGCTTCTGCATCCTGTTTGAATGGAGGCTCCTATCTCTCTGTGGAGAAGCATAGGGACATTCTGGTTTCACCGAGTCGAGATTTCACAGCTGGCTTCTTCTCTGTCGGTGAAAATGCGTTTTGCTTCTCTATTTGGTTCAGTGAACTAGCAAAAATGGAACCCCGAACTGTTGTCTGGATGGCGAATCGCGAGTACCCTGTAAATGGAAAACGGTCGAAGCTCTCGCTCCAAAAAGGTGGGAATCTGATCCTCGATGATGCTGGTAATTACGTTGTTTGGGAGACCAAGACGGCCGCGATATCCTCTGTCCGGTTATGTCTCCATGATTCTGGTAATCTTGTTCTTTCTTCAGACGGAGATACTCTCTGGCAAAGCTTTGATTTTCCGACGGACACTCTTTTACCCCTGCAACCTTTTACTAAAGTCACGCAGCTTGTTTCGCCAAGAACTGTTAGGAATGACTCAACTGGGTTTTACAAATTTTTCTTTGACGCCTTTAGCACCCTCCGCCTCATTTACGACACTCCGGCTGTTTCCAGTGTTTATTGGCACGACCCTTGGCTCATAAGTTGGGAGGCTGGCAGATCGACATATAATAACACTAGGTTTGCGATGCTCGATTCGTTGGGCGATTTCAGCTCCTCCGATAACTTCACGTTTAGGACAGCCGATTACGGAGTGAAGAATCAGAGAAGGTTAAGGATGGACGTAGACGGAAATATCCGAGTCTACAGCAGGGAAAAGGCCGGCGACAAGTGGGTAGTTTCTTGGCAAGCCATTCAAGAACCCTGCAAAATCCATGGAATTTGTGGGCCGAATAGTTTCTGTAAATACGTCCCCAGTTATGGCAGAAAATGCTCTTGCATTATCGGACATAGGATGAAAGATGTGACCGACTGGTCTCTGGGCTGCAAACCGCAATTCAATCTCTCATTCAAGAATGACGACGACTTTGTCCTAATTCCTCGTGTTGAATTCTATGGCTATACTCATGGATACTTCCCCAATTACACTTATCAGCAGTGTAAGAATTTGTGTCTTCGTCTCTGGGGATGTATAGCTTTCCAGCTCTATTATGGCGATGATGAGGCTTTTAACTGTTACCTGAAAACAATTCTGCTAAATGGGTATCAATCGCCTTCTTACCGTGGAGATCTTCACCTGAGGCTGCCAAAATCTGAATTATCCACTTACAATTCTCCAATCGATGAGTTTCAGTTCCCATGCCCGGGAGTTATGGAAATCTCGCGAACATACATCAAGAACAAAGAAAACAAAACAGTGAAAGTAATCCTCTGGTTCATCGTCTGGCTAGGAGTGTTCGAACTGATCTGTATAATTTTCGTCCGCTGGTTTTTGATCAGAACCCAGAGAAACTCAACTCCAGATTACTTTCTCGCTTCGACGGGTTTCAAACGGTTCACCTTCGGCGAGCTGAAGACGGCAACGAAGGATTTCAACGAGGAAATTGGAAGGGGCGCCGGAGGAGTTGTGTACAAAGCAACACTCCCCGATCTTCGCGTTGCGGCGGTGAAGAGGTTGCCCGAGGCTAACCAAGCAGAAGCAGAGTTTCTCGCAGAAGCGAGCACAATCGGTAGACTTAACCATATGTACTTGATACAAATGTGGGGCTACTGCGCCGAGGGAAAACACAGACTCCTTGTTTACGAATTCACGGAGCATGGGTCGCTGGCAATTAATCTTTCTTCCAAAACGCTCGATTGGAAAAGAAGATTTGAAATCGCTCTAGGCACAGCAAAAGGGTTGGCTTATCTGCACGAAGAGTGCTTAGAATGGGTTCTCCATTGCGACGTCAAGCCCCAAAATATTCTTCTGGATGCAAACTATTCACCAAAAGTTGCAGATTTCGGGATGTCCAAGCTTTTAAACAGAGGGGAACCTTCAAATTTAGGTTTCTCGAGGGCGAGAGGAACGAGAGGCTATATGGCTCCTGAATGGCTCTATAATTTGCCAATTACGTCTAAAGTGGATGTGTATAGCTATGGGGTCGTTTTGTTGGAGTTAGTGACCGGAAAGAATCCAATGGAAAGCGTCCACGCCGGGGAGAGTGACGGAGAGAGAGGGTCGAGGCGGACGTTGGCGTGGATGAGAGGCAAAATCAACGACGGAGATGAAGTGGCGTCGTGGATGGAAGAGATCGTTGATCAATCATTGTTTGGAGATTATGACGTGGGAAAGATGGAAGCTTTGGTAAAAGTTGGTGTAAAATGCTTGAGGGAAGATAGAGATGAGCGACCTACTATGGGTCAAGTAGTTGAAATGCTTCTGTCCTGA 2316 46.33 MHCLLMVASASCLNGGSYLSVEKHRDILVSPSRDFTAGFFSVGENAFCFSIWFSELAKMEPRTVVWMANREYPVNGKRSKLSLQKGGNLILDDAGNYVVWETKTAAISSVRLCLHDSGNLVLSSDGDTLWQSFDFPTDTLLPLQPFTKVTQLVSPRTVRNDSTGFYKFFFDAFSTLRLIYDTPAVSSVYWHDPWLISWEAGRSTYNNTRFAMLDSLGDFSSSDNFTFRTADYGVKNQRRLRMDVDGNIRVYSREKAGDKWVVSWQAIQEPCKIHGICGPNSFCKYVPSYGRKCSCIIGHRMKDVTDWSLGCKPQFNLSFKNDDDFVLIPRVEFYGYTHGYFPNYTYQQCKNLCLRLWGCIAFQLYYGDDEAFNCYLKTILLNGYQSPSYRGDLHLRLPKSELSTYNSPIDEFQFPCPGVMEISRTYIKNKENKTVKVILWFIVWLGVFELICIIFVRWFLIRTQRNSTPDYFLASTGFKRFTFGELKTATKDFNEEIGRGAGGVVYKATLPDLRVAAVKRLPEANQAEAEFLAEASTIGRLNHMYLIQMWGYCAEGKHRLLVYEFTEHGSLAINLSSKTLDWKRRFEIALGTAKGLAYLHEECLEWVLHCDVKPQNILLDANYSPKVADFGMSKLLNRGEPSNLGFSRARGTRGYMAPEWLYNLPITSKVDVYSYGVVLLELVTGKNPMESVHAGESDGERGSRRTLAWMRGKINDGDEVASWMEEIVDQSLFGDYDVGKMEALVKVGVKCLREDRDERPTMGQVVEMLLS 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2888934 2891249 - Bpe008282.1 Bpe02g00441 98590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00441 771 PIRSF SRK 1 771 IPR024171 GO:0004674
Bpe02g00441 771 ProSiteProfiles Protein kinase domain profile. 491 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00441 771 SMART serkin_6 491 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00441 771 SMART blect_4 16 136 IPR001480 -
Bpe02g00441 771 ProSitePatterns Protein kinases ATP-binding region signature. 497 519 IPR017441 GO:0005524
Bpe02g00441 771 Pfam D-mannose binding lectin 63 144 IPR001480 -
Bpe02g00441 771 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 191 IPR036426 -
Bpe02g00441 771 Gene3D - 9 134 IPR036426 -
Bpe02g00441 771 Gene3D Transferase(Phosphotransferase) domain 1 567 771 - -
Bpe02g00441 771 PANTHER RECEPTOR PROTEIN KINASE ZMPK1-RELATED 8 770 - -
Bpe02g00441 771 Coils Coil 769 771 - -
Bpe02g00441 771 Pfam Protein kinase domain 494 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe02g00441 771 Gene3D Phosphorylase Kinase; domain 1 457 565 - -
Bpe02g00441 771 SUPERFAMILY Protein kinase-like (PK-like) 467 769 IPR011009 -
Bpe02g00441 771 Pfam S-locus glycoprotein domain 221 301 IPR000858 GO:0048544
Bpe02g00441 771 CDD B_lectin 28 136 IPR001480 -
Bpe02g00441 771 PANTHER OS07G0415500 PROTEIN 8 770 - -
Bpe02g00441 771 ProSiteProfiles Bulb-type lectin domain profile. 4 135 IPR001480 -
Bpe02g00441 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00441 - - - jre:108998381 954.896
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00441 Bpe-Chr2:2888934 Bpe03g01026 Bpe-Chr3:29668052 0 dispersed
Bpe02g00441 Bpe-Chr2:2888934 Bpe04g00168 Bpe-Chr4:1092368 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g712 . Blo12g00974 . . Bpe02g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000774 3 4 0 1 3 3 3 3 3 3 1 2 2 2 3 3 3 2 2 2 3 3 4 3 4 3 2 6 0 11 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63160 PF00069 Pkinase 9.80E-50 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00441 Bpe_Chr02 FPKM 8.980869 9.345284 8.453426 7.773499 11.240503 11.662693 12.169535 5.711484 5.114236 5.911972