Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00449 ATGGGAATTTTAGGTTTTGTTTGCTTGGAAGATCGTGCAAGCCGGTGCATTTCCCGATGGCAAATGAAGACCTGTCGAACATTCATCGATGGCAAGAAATTTATTAAAAAAATTCAGAAAACGAAGGAGAAATTGTCCTACACGTACGATCGAGGCGAGAGCTTCGCCGGCATCTTAGGAAGTGAGAATGCCAATTATGAGTTCGTGTTTGTGGCTTCGTTCAGCCAAATTCAAAGTCATATAAGCACTTACTCTAGAGCACTCTTCCAAAGGCTTCTTCTAGTGCTGGAACAAATGGAGTTTTTTAGAGCTTTTTGTGAAGGAGAGTGTCACTCATCAAGTTCATTAATTTCCCTGGAAGATTGGGTGGATTTTGTACCAGATTTTTTTGTTCAACATCCTTATTTTCTGGAGCACGAGGAGCTGAGCTTCCCACCGTTCACTGTCGGCAACACTCATCATGCCACTGTTGGTGTTGCGGGGATTAATGATTACTGGTTGCATTCTTTAGATACTTTCAACACTGACTTCCACTGGAACAAACCAGAGAGTAGTCTTTGTGGTAATGGCAGTAATAGTGTTTTAATATCTGGTCCACTGCATGAAGAAGAGTACCTTAATAATGGTTGTAATCAGGTTCCTACAGAAAACAATTTGTCGGTGATTACACGTGATCGAACAGTGGGTGAAGGCTCTTTATTCGTAGAATGGTCTGAAGTTGTGCCGGATGCTACTGCTTGTGTTGATGAAGATGTGAGCTATAAGAAATTTGAAAATCATGAGGAATCTGACGAGGGATTGCTCCTTAAAAGGAAATTTCATGGTCTAGAAGTTGAAAAAAGAATTGATCATAAAAACAGTACCAACTCATGTGACAACCTGAAGAAAAGAACTAAGATTTCACGGGATGGCCAGCATGAGAGCATTACTGTAAAATCAAAGAAAGGCCAGAAGCACGCCCCAAAAGGGAAATCTGAAGAAGAGGGCAAAGCTGTATCTGATGGACAGAGCTGTAGCAGTTCCAGCTCAGAAGAAGAAATTGCTTCTTGTGAAAATAATGGAGAACCAACTTCAGAGTCTATGGCTAGTGCAGTAACAATTTGTGGAAAGATTAAAGCAAGTAGAGGGTCAACGACTGATCCCCAGAGTGTTTATGCAAAGAAAAGAAGAGAAAAAATTAACGACCGGCTGAGAATCTTACAAACTCTTGTACCCAATGGAACAAAGGTTGACATTAGCACTATGCTCGAGGAAGCAGTCCAGTATGTGAAGTTTTTGCAGCTCCAAATTCAGCTTTTAAGCTCAGATGAGTTATGGATGTACGCTCCATTAGCTTATAATGGATTTGACATTGGCCTGCACCAAAAGATGTCTCTATTTCAACGACAGTAA 1392 40.95 MGILGFVCLEDRASRCISRWQMKTCRTFIDGKKFIKKIQKTKEKLSYTYDRGESFAGILGSENANYEFVFVASFSQIQSHISTYSRALFQRLLLVLEQMEFFRAFCEGECHSSSSLISLEDWVDFVPDFFVQHPYFLEHEELSFPPFTVGNTHHATVGVAGINDYWLHSLDTFNTDFHWNKPESSLCGNGSNSVLISGPLHEEEYLNNGCNQVPTENNLSVITRDRTVGEGSLFVEWSEVVPDATACVDEDVSYKKFENHEESDEGLLLKRKFHGLEVEKRIDHKNSTNSCDNLKKRTKISRDGQHESITVKSKKGQKHAPKGKSEEEGKAVSDGQSCSSSSSEEEIASCENNGEPTSESMASAVTICGKIKASRGSTTDPQSVYAKKRREKINDRLRILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIQLLSSDELWMYAPLAYNGFDIGLHQKMSLFQRQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2940436 2943971 + Bpe008290.2 Bpe02g00449 98598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00449 463 CDD bHLH_AtIND_like 379 440 - -
Bpe02g00449 463 SMART finulus 383 432 IPR011598 GO:0046983
Bpe02g00449 463 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 104 458 - -
Bpe02g00449 463 MobiDBLite consensus disorder prediction 332 361 - -
Bpe02g00449 463 MobiDBLite consensus disorder prediction 286 331 - -
Bpe02g00449 463 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 104 458 - -
Bpe02g00449 463 MobiDBLite consensus disorder prediction 286 361 - -
Bpe02g00449 463 Pfam Helix-loop-helix DNA-binding domain 387 427 IPR011598 GO:0046983
Bpe02g00449 463 Gene3D - 380 442 IPR036638 GO:0046983
Bpe02g00449 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 377 442 IPR036638 GO:0046983
Bpe02g00449 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 377 426 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00449 Bpe02g01776 CCT
Bpe02g00449 Bpe05g00472 CCT
Bpe02g01776 Bpe02g00449 ECH
Bpe02g00449 Bpe02g01776 ECH
Bpe02g00449 Bpe05g00472 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00449 Bpe-Chr2:2940436 Bpe02g01776 Bpe-Chr2:20088959 4.06E-54 dispersed
Bpe02g00449 Bpe-Chr2:2940436 Bpe05g00025 Bpe-Chr5:524999 1.45E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20879 PF00010 HLH 7.90E-09 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00449 - - qsu:112027126 273.863