Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00470 TCGAATATGCTGTCTCGAAAATGTAGTTTCGATTCAAATGGCCAAAACTCTTCCTACTTCTCTGGTTTGCAGGAGTTTGAGAAGAACCCTTATCATCATCTTAAAAATCCTACTGGAATTATTCAGATGGGTCTAGCAGAAAACCAGCTCTCTTTTGATCTTCTTGAGGACTGGCTTGCTAATAACCCAGATTCGTTAGGTCTGAAAAGTAATGGAGTATCTGTGTTCAAAGAACTGGCTCTTTTCCAGGACTACCATGGATTACCGTCTTTGAAAAATGAATTGGTAGATTTCATGGCAAAAATGAGAGGAGGCAAGGAAAAGTTTGACCCTAAAAACCTTGTTCTCACAGCTGGTGCAACCTCTGCCAATGAGATTCTAATCTTTTGCCTCGCTGACCCCGGTGAAGCTTTTCTGCTTCCCACGCCTTACTATCCAGGGTTTGATAGGGATCTAAAATGGCGAACTGGAGCTGAAATTGTTCCAATACATTGCTCAAGCTCAAATGGCTTCAGAATCACAGGCGCAGCTATGGAGGAAGCGTATAAAGAAGCAGAAAACCTAAACCTAACTGTCAAAGGGATTTTAGTCACAAATCCATCAAACCCATTGGGCACAACCATGAGTAAAGAAGAACTCTACCTACTTATTGATTTTGCAGTGGCAAAAGGAATTCATATCATAAGCGACGAGATTTATTCCGGAACAGTATTTGATTCTCCTCGCTTTATAGGCATAACAGAAGCCTTAATGCAGAGAAAAGTTAGAGATAGTTTAATATGGAATAGAACTCATATTGTTTACAGTCTTTCAAAAGATCTATGTCTTCCTGGATTTAGAGTAGGAATGATTTATTCCAACAATCAATCGGTGATAGATACTGCAACAAGAATGTCGAGCTTCGGACTCATTTCTTCTCAAACCCAGTATTTACTGCAAAAAATTCTTGCAGACAAGATTTTCTCGAGAAAGTACATGAGGGAAAACAAGAAGAGGATTAAAAAAAGAAAGGAAATGATGGTTTCAGGCCTTCAAGCAGCAGGAATTGGGTGCTTGAAGAGCGACTCTGGGCTGTTCTGTTGGGTGGACATGAGACATCTTTTAGGCTCCAACACATTTGAAGCAGAAGAAGAGCTTTGGAAGAGAATACTGAATGAAGTGAAGCTCAATATTTCTCCAGGCTCTTCTTGCCATTGCTCTGAACCTGGCTGGTTCAGAATCTGCTTTGCTAATATAGCCGAGGAGACACTCTCTGTCGCAATGCTGCGCCTCCAGACATTCGTAGAGTCGACCAAGTCGGCTAGAGATGGTCCGAAAAACCTGCGAGGAAGTTGTTGTTCGACAAGATCATTGACGAAGTGGGTTTTTAAGTTGGCCTCCATTGATAGCTCACCGGATCGTTAG 1404 41.6 SNMLSRKCSFDSNGQNSSYFSGLQEFEKNPYHHLKNPTGIIQMGLAENQLSFDLLEDWLANNPDSLGLKSNGVSVFKELALFQDYHGLPSLKNELVDFMAKMRGGKEKFDPKNLVLTAGATSANEILIFCLADPGEAFLLPTPYYPGFDRDLKWRTGAEIVPIHCSSSNGFRITGAAMEEAYKEAENLNLTVKGILVTNPSNPLGTTMSKEELYLLIDFAVAKGIHIISDEIYSGTVFDSPRFIGITEALMQRKVRDSLIWNRTHIVYSLSKDLCLPGFRVGMIYSNNQSVIDTATRMSSFGLISSQTQYLLQKILADKIFSRKYMRENKKRIKKRKEMMVSGLQAAGIGCLKSDSGLFCWVDMRHLLGSNTFEAEEELWKRILNEVKLNISPGSSCHCSEPGWFRICFANIAEETLSVAMLRLQTFVESTKSARDGPKNLRGSCCSTRSLTKWVFKLASIDSSPDR 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3051122 3052803 + Bpe008311.1 Bpe02g00470 98619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00470 467 SUPERFAMILY PLP-dependent transferases 3 428 IPR015424 -
Bpe02g00470 467 Gene3D Aspartate Aminotransferase, domain 1 29 423 IPR015422 GO:0003824
Bpe02g00470 467 CDD AAT_like 82 425 - -
Bpe02g00470 467 Pfam Aminotransferase class I and II 41 421 IPR004839 GO:0009058|GO:0030170
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 76 92 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 225 248 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 135 156 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 189 213 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 43 69 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 263 287 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 295 318 - -
Bpe02g00470 467 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 113 133 - -
Bpe02g00470 467 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 11 3 439 - -
Bpe02g00470 467 Gene3D - 63 318 IPR015421 GO:0003824
Bpe02g00470 467 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 3 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00470 K01762 ACS; 1-aminocyclopropane-1-carboxylate synthase [EC:4.4.1.14] - jre:109013607 666.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00470 Bpe-Chr2:3051122 Bpe13g01262 Bpe-Chr13:17849599 0 dispersed
Bpe10g00023 Bpe-Chr10:340888 Bpe02g00470 Bpe-Chr2:3051122 0 wgd
Bpe13g00144 Bpe-Chr13:8934851 Bpe02g00470 Bpe-Chr2:3051122 0 wgd
Bpe15g00284 Bpe-Chr15:14322780 Bpe02g00470 Bpe-Chr2:3051122 0 wgd
Bpe02g00470 Bpe-Chr2:3051122 Bpe05g00012 Bpe-Chr5:379255 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g599 Blo01g01481 . . . Bpe02g00470 . . Bma01g02225 Cmo05g00121 . . . . . Sed11g0907 . . Bhi04g00467 Tan02g1683 Cmetu03g1555 . Hepe08g1362 . Lcy13g2159 Cla08g01646 Cam08g2149 Cec08g1738 Cco08g1856 Clacu08g1837 . Cre08g1621 Cone4ag1638 . Cone17ag0907 Cone20ag0251 . . . Cme03g02130 . . . . . . . . . . . . Cma05g00118 Car05g00101 . Cpe11g00103 . . . . . . . . . . . . . . . Lsi08g01554 Csa02g01865 Chy03g01621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000568 4 3 5 5 5 3 5 3 3 2 3 3 5 2 3 5 3 6 5 3 3 4 2 3 2 3 3 4 3 1 104
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00470 Bpe_Chr02 FPKM 9.011976 9.115194 9.301183 10.221155 9.962094 10.362391 11.734689 10.740126 10.820191 9.784483