Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00472 ATGGGCTCCGATGGCGTCTATACCGATCTCGTTCTTGGACTGATCAATCGCCCCAAGGAAGAGAAGTCTATCCAATCAATTCCCGAGAAAAACAAGAATCCATCATCAAAATTTAACGACACCTTTCTCACACTAGCCCTTTCCGTCGCGACCAACCGACCTGCAACAATCTCCGACGTTAGTAAGCAGTTTAGCAGCGAACCATATGGTATACTCCGGCAGGCTTCTTCTGCTAGCGCTGTATCATCGTTTTCAAACTCCTCCAGTTTCAAGCGCGATAGAGACTTCTGCGATAGTGATAAGATAGAAGAAGAGACCGAGGTAGACATACAGCCAATCTCTTCTAAGGTCAGTGAGGAAGAAGAAGATGGCACTGGCAGTCTGAGAAAAAAACTTAGACTCACAAAAGATCAGTCCGCCATTTTAGAGTACAGCTTCAAAGAGCAAGCAACTCTAAACCCCAAACAAAAACAAGACTTAGCAAGGAAGTTGAGTCTAAGCACAAGACAAGTGGAAGTCTGGTTTCAAAACAGGAGGGCGAGAACCAAGCTGAAGCAAACAGAAGAGAGCTGCGAGCTGCTGAAGAAATGCTGCGAATCACTAACAGAAGAGAACAAAAGGCTAAAGAAAGCGCTTCAAGACATGAAAACACTAAAATCAGCTGCTCATCCGCCATTTTACATGCAGCTCAAAACAGCAGCAACTCTCTCCATTTGCCCTTCTTGCGAGAGAATTTGCAGCGCCGGCGATGGGTCATCTCCCACCAGCACTCTTTCAGTTGGTCCAAACGTTGGTTAA 798 45.86 MGSDGVYTDLVLGLINRPKEEKSIQSIPEKNKNPSSKFNDTFLTLALSVATNRPATISDVSKQFSSEPYGILRQASSASAVSSFSNSSSFKRDRDFCDSDKIEEETEVDIQPISSKVSEEEEDGTGSLRKKLRLTKDQSAILEYSFKEQATLNPKQKQDLARKLSLSTRQVEVWFQNRRARTKLKQTEESCELLKKCCESLTEENKRLKKALQDMKTLKSAAHPPFYMQLKTAATLSICPSCERICSAGDGSSPTSTLSVGPNVG 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3063647 3064662 + Bpe008313.1 Bpe02g00472 98621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00472 265 SMART HOX_1 127 189 IPR001356 GO:0003677
Bpe02g00472 265 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Bpe02g00472 265 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Bpe02g00472 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 8 253 - -
Bpe02g00472 265 MobiDBLite consensus disorder prediction 108 129 - -
Bpe02g00472 265 Gene3D - 122 192 - -
Bpe02g00472 265 SUPERFAMILY Homeodomain-like 120 186 IPR009057 -
Bpe02g00472 265 PANTHER - 8 253 - -
Bpe02g00472 265 SMART halz 185 230 IPR003106 GO:0006355|GO:0043565
Bpe02g00472 265 Coils Coil 184 221 - -
Bpe02g00472 265 CDD homeodomain 129 186 IPR001356 GO:0003677
Bpe02g00472 265 Pfam Homeodomain 129 183 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00472 Bpe04g00136 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00472 Bpe-Chr2:3063647 Bpe04g01452 Bpe-Chr4:21149666 9.25E-55 dispersed
Bpe10g00025 Bpe-Chr10:368378 Bpe02g00472 Bpe-Chr2:3063647 2.12E-60 wgd
Bpe15g00281 Bpe-Chr15:14286829 Bpe02g00472 Bpe-Chr2:3063647 2.86E-59 wgd
Bpe02g00472 Bpe-Chr2:3063647 Bpe04g00136 Bpe-Chr4:920042 2.46E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20885 PF00046 Homeodomain 2.10E-16 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00472 K09338 - qsu:111996753 218.394