Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00475 ACGATGATCGGCGAACCGACGAGATCGTGTCACCACTGCGACGTGCCTCCATGGGATCCACTGTTTCCCGTTGTTATTACTTCCTCTGTTAACTTCAATGCAAATGCATGGGGCCATGACTCTGTCATGGCGATGCGCGGTTGTCTTCCCTATCCAGCCACCGACGAAGTCGATATGCCGGTTGATGTCTTTTCTTCTGACTATTTTCGCATGTTCGACTTTAAGGTACGCCGGTGTGTGCGGGGTAGGGCGCATGACTGGACGGAGTGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGACCCGAGGAAGTATCATTACTCGGGGACGCCGTGTGAGGAGTTTCGAAAAGGAAGTTGCAGAAAGGGCGACTCTTGCGAGTTTGCGCATGGAGTCTTCGAGTGTTGGCTCCACCCGGCTCGTTATCGGACTCAACCGTGCAAGGACGGCCTCGATTGCCACAGGCGGGTATGTTTTTTCGCTCACTCCCCGGAACAACTCCGGATTATTAATCAGAACGATCTACCAACTCAAGGACCGTGCGAGTTATTTGTTGGCGGCTCTCCTTCTTCTGTTCGCATCGTACTTAAAGAACCATTTGTTTCATCTCCTACATCAATTCTTGCATCGCCGCCTCTATCTCCTCCCTCCGAAGCGTCTCCCATGCCGCCTAATAGACCTCCGATTAGCTGCGAATCGTTGTCGGAAATCGTTTCCTCTATGCAGAACGTCCATCTGGCGAGGAAGAAGAAGAGCTATCCGTGCCAATGGAAGTTCGAAAATCCAAATCGTTCAGGACTATCTGCATGTGAATACTGGGGCCGGAATTGCGAAGAAGAGGAGCCAGCAATGGAAAGAGTTGAATCCGGTAGAAACCTGCGGGTGAAAATGTATGCGAAACTGAGTAAAGAGTACTCGCTGGGAAGAAACGAATCGGCGGCGTCATCCCCCGACATCGGCTGGGTGTCGGAGTTAATCAAGTGA 990 52.22 TMIGEPTRSCHHCDVPPWDPLFPVVITSSVNFNANAWGHDSVMAMRGCLPYPATDEVDMPVDVFSSDYFRMFDFKVRRCVRGRAHDWTECPYAHPGEKARRRDPRKYHYSGTPCEEFRKGSCRKGDSCEFAHGVFECWLHPARYRTQPCKDGLDCHRRVCFFAHSPEQLRIINQNDLPTQGPCELFVGGSPSSVRIVLKEPFVSSPTSILASPPLSPPSEASPMPPNRPPISCESLSEIVSSMQNVHLARKKKSYPCQWKFENPNRSGLSACEYWGRNCEEEEPAMERVESGRNLRVKMYAKLSKEYSLGRNESAASSPDIGWVSELIK 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3085436 3086425 + Bpe008316.2 Bpe02g00475 98624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00475 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 133 IPR000571 GO:0046872
Bpe02g00475 329 ProSiteProfiles Zinc finger C3H1-type profile. 109 135 IPR000571 GO:0046872
Bpe02g00475 329 PANTHER UNKEMPT FAMILY MEMBER 55 260 IPR045234 -
Bpe02g00475 329 PANTHER UNKEMPT FAMILY MEMBER 263 329 IPR045234 -
Bpe02g00475 329 Gene3D - 108 172 - -
Bpe02g00475 329 SMART c3hfinal6 143 166 IPR000571 GO:0046872
Bpe02g00475 329 SMART c3hfinal6 108 134 IPR000571 GO:0046872
Bpe02g00475 329 MobiDBLite consensus disorder prediction 211 228 - -
Bpe02g00475 329 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 263 329 - -
Bpe02g00475 329 MobiDBLite consensus disorder prediction 209 228 - -
Bpe02g00475 329 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 55 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00475 Bpe-Chr2:3085436 Bpe02g02219 Bpe-Chr2:23235449 9.42E-98 dispersed
Bpe02g00475 Bpe-Chr2:3085436 Bpe13g01268 Bpe-Chr13:17880145 4.86E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20887 PF00642 zf-CCCH 4.30E-06 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00475 - - tcc:18588020 342.428