Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe02g00475 | ACGATGATCGGCGAACCGACGAGATCGTGTCACCACTGCGACGTGCCTCCATGGGATCCACTGTTTCCCGTTGTTATTACTTCCTCTGTTAACTTCAATGCAAATGCATGGGGCCATGACTCTGTCATGGCGATGCGCGGTTGTCTTCCCTATCCAGCCACCGACGAAGTCGATATGCCGGTTGATGTCTTTTCTTCTGACTATTTTCGCATGTTCGACTTTAAGGTACGCCGGTGTGTGCGGGGTAGGGCGCATGACTGGACGGAGTGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGACCCGAGGAAGTATCATTACTCGGGGACGCCGTGTGAGGAGTTTCGAAAAGGAAGTTGCAGAAAGGGCGACTCTTGCGAGTTTGCGCATGGAGTCTTCGAGTGTTGGCTCCACCCGGCTCGTTATCGGACTCAACCGTGCAAGGACGGCCTCGATTGCCACAGGCGGGTATGTTTTTTCGCTCACTCCCCGGAACAACTCCGGATTATTAATCAGAACGATCTACCAACTCAAGGACCGTGCGAGTTATTTGTTGGCGGCTCTCCTTCTTCTGTTCGCATCGTACTTAAAGAACCATTTGTTTCATCTCCTACATCAATTCTTGCATCGCCGCCTCTATCTCCTCCCTCCGAAGCGTCTCCCATGCCGCCTAATAGACCTCCGATTAGCTGCGAATCGTTGTCGGAAATCGTTTCCTCTATGCAGAACGTCCATCTGGCGAGGAAGAAGAAGAGCTATCCGTGCCAATGGAAGTTCGAAAATCCAAATCGTTCAGGACTATCTGCATGTGAATACTGGGGCCGGAATTGCGAAGAAGAGGAGCCAGCAATGGAAAGAGTTGAATCCGGTAGAAACCTGCGGGTGAAAATGTATGCGAAACTGAGTAAAGAGTACTCGCTGGGAAGAAACGAATCGGCGGCGTCATCCCCCGACATCGGCTGGGTGTCGGAGTTAATCAAGTGA | 990 | 52.22 | TMIGEPTRSCHHCDVPPWDPLFPVVITSSVNFNANAWGHDSVMAMRGCLPYPATDEVDMPVDVFSSDYFRMFDFKVRRCVRGRAHDWTECPYAHPGEKARRRDPRKYHYSGTPCEEFRKGSCRKGDSCEFAHGVFECWLHPARYRTQPCKDGLDCHRRVCFFAHSPEQLRIINQNDLPTQGPCELFVGGSPSSVRIVLKEPFVSSPTSILASPPLSPPSEASPMPPNRPPISCESLSEIVSSMQNVHLARKKKSYPCQWKFENPNRSGLSACEYWGRNCEEEEPAMERVESGRNLRVKMYAKLSKEYSLGRNESAASSPDIGWVSELIK | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3085436 | 3086425 | + | Bpe008316.2 | Bpe02g00475 | 98624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe02g00475 | 329 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 112 | 133 | IPR000571 | GO:0046872 | |
Bpe02g00475 | 329 | ProSiteProfiles | Zinc finger C3H1-type profile. | 109 | 135 | IPR000571 | GO:0046872 | |
Bpe02g00475 | 329 | PANTHER | UNKEMPT FAMILY MEMBER | 55 | 260 | IPR045234 | - | |
Bpe02g00475 | 329 | PANTHER | UNKEMPT FAMILY MEMBER | 263 | 329 | IPR045234 | - | |
Bpe02g00475 | 329 | Gene3D | - | 108 | 172 | - | - | |
Bpe02g00475 | 329 | SMART | c3hfinal6 | 143 | 166 | IPR000571 | GO:0046872 | |
Bpe02g00475 | 329 | SMART | c3hfinal6 | 108 | 134 | IPR000571 | GO:0046872 | |
Bpe02g00475 | 329 | MobiDBLite | consensus disorder prediction | 211 | 228 | - | - | |
Bpe02g00475 | 329 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 263 | 329 | - | - | |
Bpe02g00475 | 329 | MobiDBLite | consensus disorder prediction | 209 | 228 | - | - | |
Bpe02g00475 | 329 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 55 | 260 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g00475 | Bpe-Chr2:3085436 | Bpe02g02219 | Bpe-Chr2:23235449 | 9.42E-98 | dispersed | |
Bpe02g00475 | Bpe-Chr2:3085436 | Bpe13g01268 | Bpe-Chr13:17880145 | 4.86E-102 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
20887 | PF00642 | zf-CCCH | 4.30E-06 | CL0537 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe02g00475 | - | - | tcc:18588020 | 342.428 |