Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00486 ATGCTGAAAACTGAAGAAAATTATGATGTTGAGCTGGTTAGTTCCAAGCAGAAAATTCAGCATGAATTTTGGCCTCTTGAAGCCGTAGATGCAAAGAAGGCAAAGTTTCCGTGCTGTTTAGTATGGACTCCCCTTCCAGTTGTCTCTTGGTTGGCACCCTTCATTGGACATGCTGGCATTTGCAGGGAGGATGGAACTATTTTAGACTTCTCTGGCTCCAATTTTGTGAATGTTGACGATCTTGCCTTTGGTCCTGTTGCCAGATATCTTCAACTTGATAGAAAATTGTGTTGCTTCCCTTCCAATCTGGCTGGCCACACATGTACACACAGCTATAAGCATTCTGAATTTGGAACTGCCAGTATATGGGACGATGCTCTTCAATCTAGCACGAGATATTTCGAGCACAAAACTTACAACCTTTTTACTTGCAACAGCTACTCATATGTCGCTAATTGTCTTAATCGGCTCTGTTACGGCGGGTCAATGAATTGGAACATGATAAACGTAGCAAGTCTGGTTCTGTTGAAGGGGCAATGGGTTGATAGTATTTCGATAATCAAATCCTTCCTCCCCTTTGTAGCGGTTTTATGTTTCGGAATATATGTAGCCGGGTGGTCGTTTATGTTGTCTTTTTCTCAGTCCTCATCATCCTCTGCGGTTGAGGATGAAGCCATCCGTAGAAGCCGAATTCTGGCAAGCAAGCTCTACTGCGACGTTCCTCTTTCCAAGGTGCCGCTGATTTATTCTTCATCATACGATATTGCTTTTCTCGGAATAGAAAAGTTGCACCCATTTGATTCCACTAAATGGGCTCGCATTTGTAAATTTCTGATCAACGACGGTGCTTTGGACCGAAATTGTATAGTTCAGCCTTTGGAAGCTTCGGAGGAGGATCTTCTCGTGGTGCATACGAAATCCTATTTAAATAGTTTGAAGTGCAGTGCAAATGTTGCAAAGATAACAGAGGTCCCTCCTGTTGCACTCTTCCCTAATATGGTGGTCCAGGCTAAAGTCCTTTCTCCATTTCGCTACCAGGTTGGAGGATCTATATTGGCCACAAAATTAGCAAAAGAACGAGGGTGGGCCATAAATGTTGGAGGAGGGTTCCATCACTGCTCAGGGGACAAAGGGGGAGGATTCTGTGCTTATGCTGATATTTCTCTTTGCATACACTTTGCCTTTACTCGATTAAGTATATCAAGGGTGATGATTATTGATCTTGATGCCCACCAAGGAAATGGCCACGAAACAGATTTTGCTAATGACAGACGGGTGTATATTTTGGATATGTTCAACCCCAATATATATCCATTTGATTACGAGGCCAGGAAACATATTGATCAAAGAGTTGAAGTGCCAACTGGGACCAGTACAAGTGAGTACTTAAAGAAGTTAGACGAATCCCTAGAGTTAGCTGGGCAGTCATTTGATCCTGAGTTGGTTGTTTATAACGCTGGAACTGATATTTTAGATGGAGATCCTTTGGGATGCTTGAAGGTAAGTCCCAATGGAATAACCGATAGAGATGAAAAGGTCTTTCGGTTTGCCCGCGAAAGGAACATTCCAATCGTCATGCTAACATCGGGTGGTTACATGAAATCTAATGCGAGAATAATTGCCGATTCAATTGGGAATCTGTCTAGGAAATGTTTAATCGATACGAAGAACGCTCCGGCAGGAAGGATATGA 1692 42.85 MLKTEENYDVELVSSKQKIQHEFWPLEAVDAKKAKFPCCLVWTPLPVVSWLAPFIGHAGICREDGTILDFSGSNFVNVDDLAFGPVARYLQLDRKLCCFPSNLAGHTCTHSYKHSEFGTASIWDDALQSSTRYFEHKTYNLFTCNSYSYVANCLNRLCYGGSMNWNMINVASLVLLKGQWVDSISIIKSFLPFVAVLCFGIYVAGWSFMLSFSQSSSSSAVEDEAIRRSRILASKLYCDVPLSKVPLIYSSSYDIAFLGIEKLHPFDSTKWARICKFLINDGALDRNCIVQPLEASEEDLLVVHTKSYLNSLKCSANVAKITEVPPVALFPNMVVQAKVLSPFRYQVGGSILATKLAKERGWAINVGGGFHHCSGDKGGGFCAYADISLCIHFAFTRLSISRVMIIDLDAHQGNGHETDFANDRRVYILDMFNPNIYPFDYEARKHIDQRVEVPTGTSTSEYLKKLDESLELAGQSFDPELVVYNAGTDILDGDPLGCLKVSPNGITDRDEKVFRFARERNIPIVMLTSGGYMKSNARIIADSIGNLSRKCLIDTKNAPAGRI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3139492 3144142 - Bpe008325.1 Bpe02g00486 98635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00486 563 PANTHER HISTONE DEACETYLASE 11 218 558 - -
Bpe02g00486 563 PANTHER HISTONE DEACETYLASE 11 218 558 - -
Bpe02g00486 563 SUPERFAMILY Arginase/deacetylase 244 542 IPR023696 -
Bpe02g00486 563 PRINTS Histone deacetylase superfamily signature 479 489 IPR000286 -
Bpe02g00486 563 PRINTS Histone deacetylase superfamily signature 402 417 IPR000286 -
Bpe02g00486 563 PRINTS Histone deacetylase superfamily signature 368 391 IPR000286 -
Bpe02g00486 563 CDD HDAC_classIV 264 547 IPR044150 GO:0004407|GO:0016575
Bpe02g00486 563 Pfam Histone deacetylase domain 264 538 IPR023801 -
Bpe02g00486 563 Gene3D Histone deacetylase domain 244 559 IPR037138 -
Bpe02g00486 563 Pfam Protein of unknown function (DUF778) 97 180 IPR008496 -
Bpe02g00486 563 Pfam Protein of unknown function (DUF778) 45 95 IPR008496 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00486 K11418 HDAC11; histone deacetylase 11 [EC:3.5.1.98] - qsu:112000524 570.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00486 Bpe-Chr2:3139492 Bpe15g00417 Bpe-Chr15:15733277 5.33E-60 dispersed
Bpe02g00486 Bpe-Chr2:3139492 Bpe04g00130 Bpe-Chr4:876306 6.88E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g71 Blo01g01469 . Bda01g00617 . . Bpe02g00486 . . . . . . . . . . . . . . . . . . Cla05g01825 Cam05g1947 Cec05g1960 Cco05g2019 Clacu05g1939 Cmu05g1820 Cre05g1945 Cone4ag1657 . . . . . . . . . . . . . . . . Cmo01g01772 . . . . . . . Bhi09g03164 . . . Hepe01g1874 Mch11g0407 . . . . . . . . . . . Cme07g00231
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009853 1 5 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00486 Bpe_Chr02 FPKM 91.571999 99.928711 49.477688 47.482376 49.15836 47.376324 48.199757 41.590614 42.72427 42.75359