Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00488 ATGTCTTCAAAGATGAGGATTATGCAGAAAATGGTAAACAAGGAAGCAGAAGCCACACAAAATTTCGGAAGCCGTCAATATCAGAAGAGTGGCATGAATTCTTCCAGTGGCAACAACAACAATATTACAATTAGGGTTTGCTCTGATTGTAAAACCACCACTACTCCCCTCTGGAGGAGTGGCCCTCAAGGACCTAAGTCTCTTTGCAATGCCTGTGGCATTAGGCAGAGGAAAGCCAGAAGGGCAATGGCGGAGGCTGCCGGAGCAACTGCAAACAGTACAGTTGTGTCTTCCGATTCGCCGTCGCTGAAGCAGAACAAAGAAAAGAAATCAAGAACGACGAGCCATGTGGGACAAAACAAGGCTAAATTCAAGCTTCCAGACAGTGTTAACGGCGACAGGAAGCTTTCTTTCAACAATATAGCTCTGAGTTTGAGCGAGACTTCTGCATTTGAACGAGTGTTCCCTCGGGATGAAGAAGAAGGTGCAATCCTATTAATGGAGCTCTCCTGTGGATTTGTTCACGGTTGA 531 45.95 MSSKMRIMQKMVNKEAEATQNFGSRQYQKSGMNSSSGNNNNITIRVCSDCKTTTTPLWRSGPQGPKSLCNACGIRQRKARRAMAEAAGATANSTVVSSDSPSLKQNKEKKSRTTSHVGQNKAKFKLPDSVNGDRKLSFNNIALSLSETSAFERVFPRDEEEGAILLMELSCGFVHG 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3163215 3163951 - Bpe008327.1 Bpe02g00488 98637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00488 176 Gene3D - 43 124 IPR013088 GO:0006355|GO:0008270
Bpe02g00488 176 CDD ZnF_GATA 46 78 IPR000679 GO:0006355|GO:0043565
Bpe02g00488 176 ProSiteProfiles GATA-type zinc finger domain profile. 45 77 IPR000679 GO:0006355|GO:0043565
Bpe02g00488 176 Pfam GATA zinc finger 47 80 IPR000679 GO:0006355|GO:0043565
Bpe02g00488 176 SMART GATA_3 41 93 IPR000679 GO:0006355|GO:0043565
Bpe02g00488 176 MobiDBLite consensus disorder prediction 18 42 - -
Bpe02g00488 176 ProSitePatterns GATA-type zinc finger domain. 47 72 IPR000679 GO:0006355|GO:0043565
Bpe02g00488 176 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 176 - -
Bpe02g00488 176 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 43 81 - -
Bpe02g00488 176 MobiDBLite consensus disorder prediction 83 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00488 - - - qlo:115970795 173.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00488 Bpe-Chr2:3163215 Bpe02g02202 Bpe-Chr2:23153327 9.07E-41 dispersed
Bpe02g00488 Bpe-Chr2:3163215 Bpe04g00128 Bpe-Chr4:861152 2.41E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g104 . Blo12g01014 . . . Bpe02g00488 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe02g00259 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001864 2 2 2 1 4 2 3 2 2 2 2 2 1 2 2 2 2 5 3 2 2 2 2 2 2 2 2 4 2 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20888 PF00320 GATA 4.50E-17 CL0167 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00488 Bpe_Chr02 FPKM 13.440239 14.801003 17.851833 15.908015 10.941738 10.162398 10.63727 20.717836 23.190886 21.451698