Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00495 ATGGGTGCTTCAGGAAAATGGGTCAAATCTCTTATGGGTCTCAGAAAGCCAGACAAGGAAGAACAAGAAAAGCAGTGTGGTAAGAGTACGAAATGGAAGCTATGGAGAAACCCATCAAGCGATCCAGGCTCTTCTTGGAAAGGCTTCAAAGGAGGTCGTAGAGCAGCGTCTGAGGGCTCAGATTCTCCGCGAGCAGTTGATGCTTTTACAGCGGCCCGGGCTGCATTACTTCGAGCTCCTCCTAAAGATTTTAAGGTTGTGAGGCAAGAATGGGCGGCAATTCGGATCCAAACTGCCTTTCGTGGCTTTCTGGCAAGACGCGCGTTGCGGGCGTTGAAAGGAGTGGTGAGGCTTCAGGCTCTGGTTCGGGGTCGGCTGGTGAGAAAGCAAGCGGCCGTGACGCTGAGATGCATGCAAGCCCTTGTTCGAGTCCAGGCTCGAGTGAGGGCTCGTCGAGTAAGAATGTCTATGGAGGGTCAGGCCGTTCAACAAATAATAACCGAACATCGAACGAAGGCCGATCTCTTGAAAGAGGCTGAGTCTCAGGCAGGGTGGTGTGATAGTAGAGGAACTTTGAATGATGTAAAGGCAAAGCTGCAAATGAGGAAAGAAGGAGCTTTTAAGAGAGAGAGAGCATTTGCATACTCTCTGGCTCAAAAGCAATGGAAGTCAACTCACTCTGCCATTTCTAGAACTAATGCGCCGTTGTCGTCTGTTAAGAATCAAGAGTTTGATAAGAACAGCTGGGGATGGAGCTGGTTAGAGAGATGGATGGCTGCTAAGCCTTGGGAAACCAGGTTGATGGAACAACCTCAGGATGATTCACTACCTTCGAAGACCGTCATCGATTCTTCTTCCAGTAAACAGTCGAAAGAGGTTGAATCTTCTTGCTACATAAAAGTCAGAAAAAACAACATTTCTACTCGAATTTCTGCTAAACCTCCTCAAATAAACCAAGTTCATTGGTCCTCGTCGAGCCCGAGTTCTGATTTTCGATATGACGAGAGCTCAGCTTCGTCCTCGTTTTGCACCTCCGTAACTCCGGCTTCCTGCAACACTTTAAAGACTAGTGAAAGAACAGAAGACAGCTCGAGAAATCGTCCGAGTTACATGAACTTGACTGAGTCAACAAAAGCGAAACAGAAAAGAGGCGGTTATTTGCCTCATAGAAATCAAATGCAAACGAGGGACGAGTTCATCAAGTTCATCAACAGCTCGGCAGATTTCTCAAATGAGGATTCCAAAAGTAGTGCTGGCTCTGACCCTTCTGTCAATTTATTCAAGCCACTGGTATTTCCGAATCGATCTGGTAAGAGTGCCATGAAAGCAAGATGA 1335 47.19 MGASGKWVKSLMGLRKPDKEEQEKQCGKSTKWKLWRNPSSDPGSSWKGFKGGRRAASEGSDSPRAVDAFTAARAALLRAPPKDFKVVRQEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQQIITEHRTKADLLKEAESQAGWCDSRGTLNDVKAKLQMRKEGAFKRERAFAYSLAQKQWKSTHSAISRTNAPLSSVKNQEFDKNSWGWSWLERWMAAKPWETRLMEQPQDDSLPSKTVIDSSSSKQSKEVESSCYIKVRKNNISTRISAKPPQINQVHWSSSSPSSDFRYDESSASSSFCTSVTPASCNTLKTSERTEDSSRNRPSYMNLTESTKAKQKRGGYLPHRNQMQTRDEFIKFINSSADFSNEDSKSSAGSDPSVNLFKPLVFPNRSGKSAMKAR 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3201970 3203787 - Bpe008334.2 Bpe02g00495 98644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00495 444 MobiDBLite consensus disorder prediction 354 395 - -
Bpe02g00495 444 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Bpe02g00495 444 SMART iq_5 111 132 IPR000048 GO:0005515
Bpe02g00495 444 SMART iq_5 88 110 IPR000048 GO:0005515
Bpe02g00495 444 MobiDBLite consensus disorder prediction 409 444 - -
Bpe02g00495 444 MobiDBLite consensus disorder prediction 271 288 - -
Bpe02g00495 444 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Bpe02g00495 444 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Bpe02g00495 444 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Bpe02g00495 444 MobiDBLite consensus disorder prediction 409 423 - -
Bpe02g00495 444 MobiDBLite consensus disorder prediction 1 63 - -
Bpe02g00495 444 MobiDBLite consensus disorder prediction 12 30 - -
Bpe02g00495 444 PANTHER IQ-DOMAIN 5-RELATED 1 443 - -
Bpe02g00495 444 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 443 - -
Bpe02g00495 444 MobiDBLite consensus disorder prediction 269 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00495 - - - qsu:112015613 548.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00495 Bpe-Chr2:3201970 Bpe14g00783 Bpe-Chr14:5953139 3.24E-30 dispersed
Bpe01g00879 Bpe-Chr1:19093348 Bpe02g00495 Bpe-Chr2:3201970 3.34E-30 transposed
Bpe03g00849 Bpe-Chr3:28308222 Bpe02g00495 Bpe-Chr2:3201970 1.09E-24 transposed
Bpe11g00883 Bpe-Chr11:6512334 Bpe02g00495 Bpe-Chr2:3201970 4.06E-55 transposed
Bpe04g01589 Bpe-Chr4:22157407 Bpe02g00495 Bpe-Chr2:3201970 8.55E-38 transposed
Bpe04g01873 Bpe-Chr4:23845940 Bpe02g00495 Bpe-Chr2:3201970 1.38E-35 transposed
Bpe02g00495 Bpe-Chr2:3201970 Bpe02g01543 Bpe-Chr2:18514597 6.27E-91 wgd
Bpe02g00495 Bpe-Chr2:3201970 Bpe04g00122 Bpe-Chr4:834040 6.54E-126 wgd
Bpe02g00495 Bpe-Chr2:3201970 Bpe06g00782 Bpe-Chr6:18055828 9.09E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00495 Bpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0