Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00502 ATGGAAAACGGTGCTTCGCCTAATGCGCTTACGGTTGAGGATATCTTTCGGGATCTTAAAGGTCGCAGGGCTGGCATGATTAAAGCTCTTACTACTGATTTTCTGAATGCAGAGAGGGAAAACCTCTGCCTTTATGGATATCCCGATGGGAATTGGGCTGTCAGTTTACCTGCCGAAGAAGTGCCTTCTGAGCTTCCAGAACCTGCACTGGGAATTAATTTTGCCAGAGATGGGATGCATGCGAAGGAGTGGGCATCGTTGGTTGCTGTCCACAGTGATTCATGGTTACTTTCTGTAGCCTTTTACTACGGTGCTAGGTTTGAATTTCGTCAAACTGATCGGATGCGTCTTTTTGATATGATAAACGATCTTCCAACAATATTTGAGGTTCTAAAGGAGTTAGCGGAGAAACAAAAGAAGACGAAGGCATCAGTTTCAAAACACAGCCGCAACAAGTTTATATCCAAATCAAAGATTTTCGCTCCTCTGCCAAATTTTGCATTTTGTTGGCTGACAATGCAGCAATGTACTGATTTTCAGGAAGAACTTTCACTGCCAATGCAAGTCGTGGATGAGGAAGATGGTGATGGACAGGAAGAAACTTTATGTGGAGCCTGTGATGAGAACGATGGAACTGATGAATTCTGGATCTGCTGTGACGCGTGTGAGAAGTGGTTCCATGGAAAATGTGTTAAGATCACCGCAGCAAGAGCAGAGCACATCAAGCATTACAAATGCCCGTCTTGCAGTAACAAGAGACCACGACAATAA 771 44.23 MENGASPNALTVEDIFRDLKGRRAGMIKALTTDFLNAERENLCLYGYPDGNWAVSLPAEEVPSELPEPALGINFARDGMHAKEWASLVAVHSDSWLLSVAFYYGARFEFRQTDRMRLFDMINDLPTIFEVLKELAEKQKKTKASVSKHSRNKFISKSKIFAPLPNFAFCWLTMQQCTDFQEELSLPMQVVDEEDGDGQEETLCGACDENDGTDEFWICCDACEKWFHGKCVKITAARAEHIKHYKCPSCSNKRPRQ 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3263991 3265646 - Bpe008342.2 Bpe02g00502 98651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00502 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Bpe02g00502 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Bpe02g00502 256 SUPERFAMILY FYVE/PHD zinc finger 192 254 IPR011011 -
Bpe02g00502 256 CDD PHD_AL_plant 202 252 IPR044104 -
Bpe02g00502 256 SMART PHD_3 202 250 IPR001965 -
Bpe02g00502 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Bpe02g00502 256 Pfam Alfin 11 132 IPR021998 GO:0006355|GO:0042393
Bpe02g00502 256 Pfam PHD-finger 203 252 IPR019787 -
Bpe02g00502 256 PANTHER CPG BINDING PROTEIN 8 255 IPR045104 GO:0006355|GO:0042393
Bpe02g00502 256 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 8 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00502 - - - csin:114296613 332.798
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00502 Bpe14g00276 CCT
Bpe02g00502 Bpe14g00276 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00502 Bpe-Chr2:3263991 Bpe02g02185 Bpe-Chr2:23047068 2.60E-91 dispersed
Bpe14g00276 Bpe-Chr14:2783384 Bpe02g00502 Bpe-Chr2:3263991 1.82E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g139 Blo01g01452 Blo12g01023 . . . Bpe02g00502 . Bma01g02201 Cmo05g00430 Cmo12g00597 . Cma05g00416 . Car12g00605 Sed08g1791 Cpe07g00574 . Bhi04g01504 Tan02g1591 Cmetu03g1113 . Hepe08g1423 . Lcy13g2215 . . . . . . . . . . . . . . . Blo17g00276 . . Bda13g01589 Bpe14g00276 . . Bma02g00545 . . . . Cma12g00657 . Car05g00354 Cpe11g00358 . . . . . . . . Cla08g00996 Cam08g1443 Cec08g1020 Cco08g1144 . . Cre08g0932 Lsi08g00842 . Chy03g00663 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00728 . 1 258 Alfin-like Transcription Factor Family AT1G14510 80.6 4.1e-112 401.0
Bpe14g00276 CCT,ECH 9 247 Alfin-like Transcription Factor Family AT1G14510 69.7 4.6e-95 344.4
Bpe02g02185 . 1 249 Alfin-like Transcription Factor Family AT1G14510 72.7 4.3e-93 337.8
Bpe13g01240 . 1 257 Alfin-like Transcription Factor Family AT1G14510 67.6 3.4e-90 328.2
Bpe04g01807 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.6 2.7e-79 292.0
Bpe04g00775 . 7 250 Alfin-like Transcription Factor Family AT1G14510 58.6 2.1e-76 282.3
Bpe02g00502 CCT,ECH 1 253 Alfin-like Transcription Factor Family AT1G14510 51.5 1.5e-69 259.6
Bpe02g00909 . 7 241 Alfin-like Transcription Factor Family AT1G14510 54.3 1.2e-66 250.0
Bpe02g02185 . 1 251 Alfin-like Transcription Factor Family AT5G26210 80.3 2.9e-105 378.3
Bpe14g00276 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 5.5e-104 374.0
Bpe13g01240 . 1 259 Alfin-like Transcription Factor Family AT5G26210 72.6 7.1e-104 373.6
Bpe05g00728 . 9 260 Alfin-like Transcription Factor Family AT5G26210 70.1 2.8e-92 335.1
Bpe04g01807 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.5 1.1e-80 296.6
Bpe04g00775 . 4 252 Alfin-like Transcription Factor Family AT5G26210 57.3 2.5e-80 295.4
Bpe02g00502 CCT,ECH 1 255 Alfin-like Transcription Factor Family AT5G26210 56.9 7.9e-79 290.4
Bpe02g00909 . 4 243 Alfin-like Transcription Factor Family AT5G26210 56.4 2.5e-72 268.9
Bpe13g01240 . 3 259 Alfin-like Transcription Factor Family AT3G42790 72.0 6.8e-99 357.1
Bpe02g02185 . 3 251 Alfin-like Transcription Factor Family AT3G42790 77.9 8.8e-99 356.7
Bpe14g00276 CCT,ECH 3 249 Alfin-like Transcription Factor Family AT3G42790 67.7 1.7e-94 342.4
Bpe05g00728 . 9 260 Alfin-like Transcription Factor Family AT3G42790 67.5 4.4e-90 327.8
Bpe04g01807 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.1 2.0e-79 292.4
Bpe04g00775 . 6 252 Alfin-like Transcription Factor Family AT3G42790 56.2 3.0e-78 288.5
Bpe02g00502 CCT,ECH 1 255 Alfin-like Transcription Factor Family AT3G42790 53.8 7.5e-74 273.9
Bpe02g00909 . 6 243 Alfin-like Transcription Factor Family AT3G42790 52.9 2.1e-68 255.8
Bpe04g01807 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.8 1.4e-112 402.5
Bpe04g00775 . 4 253 Alfin-like Transcription Factor Family AT5G05610 70.9 2.6e-103 371.7
Bpe02g00909 . 4 244 Alfin-like Transcription Factor Family AT5G05610 68.7 3.5e-92 334.7
Bpe14g00276 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 7.2e-90 327.0
Bpe13g01240 . 4 259 Alfin-like Transcription Factor Family AT5G05610 59.1 1.3e-86 316.2
Bpe02g02185 . 4 251 Alfin-like Transcription Factor Family AT5G05610 60.6 5.4e-85 310.8
Bpe05g00728 . 9 260 Alfin-like Transcription Factor Family AT5G05610 63.4 1.3e-83 306.2
Bpe02g00502 CCT,ECH 6 256 Alfin-like Transcription Factor Family AT5G05610 51.2 4.7e-65 244.6
Bpe03g01140 . 1 174 Alfin-like Transcription Factor Family AT5G05610 67.6 1.4e-61 233.0
Bpe04g01807 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.6 6.5e-96 347.1
Bpe04g00775 . 42 253 Alfin-like Transcription Factor Family AT3G11200 72.7 8.0e-86 313.5
Bpe02g00909 . 42 244 Alfin-like Transcription Factor Family AT3G11200 68.3 6.4e-75 277.3
Bpe14g00276 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 1.1e-71 266.5
Bpe05g00728 . 49 260 Alfin-like Transcription Factor Family AT3G11200 63.7 7.3e-71 263.8
Bpe13g01240 . 44 259 Alfin-like Transcription Factor Family AT3G11200 61.1 2.8e-70 261.9
Bpe02g02185 . 44 251 Alfin-like Transcription Factor Family AT3G11200 61.7 1.5e-68 256.1
Bpe03g01140 . 1 174 Alfin-like Transcription Factor Family AT3G11200 64.8 1.9e-58 222.6
Bpe02g00502 CCT,ECH 34 256 Alfin-like Transcription Factor Family AT3G11200 51.3 7.8e-57 217.2
Bpe15g01161 . 85 216 Alfin-like Transcription Factor Family AT3G11200 64.7 8.4e-43 170.6
Bpe05g00728 . 1 169 Alfin-like Transcription Factor Family AT2G02470 81.7 7.0e-75 277.3
Bpe02g02185 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 2.9e-65 245.4
Bpe13g01240 . 1 158 Alfin-like Transcription Factor Family AT2G02470 74.7 3.2e-64 241.9
Bpe14g00276 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 3.0e-62 235.3
Bpe04g01807 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 6.8e-54 207.6
Bpe04g00775 . 7 154 Alfin-like Transcription Factor Family AT2G02470 66.2 1.5e-53 206.5
Bpe02g00502 CCT,ECH 1 139 Alfin-like Transcription Factor Family AT2G02470 63.4 1.4e-46 183.3
Bpe02g00909 . 7 154 Alfin-like Transcription Factor Family AT2G02470 58.9 5.4e-43 171.4
Bpe13g01240 . 3 167 Alfin-like Transcription Factor Family AT5G20510 77.6 6.3e-73 270.4
Bpe02g02185 . 3 160 Alfin-like Transcription Factor Family AT5G20510 77.2 1.7e-70 262.3
Bpe14g00276 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 1.2e-66 249.6
Bpe05g00728 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 7.0e-64 240.4
Bpe04g01807 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.7 1.2e-52 203.0
Bpe04g00775 . 6 134 Alfin-like Transcription Factor Family AT5G20510 69.5 1.6e-52 202.6
Bpe02g00502 CCT,ECH 1 166 Alfin-like Transcription Factor Family AT5G20510 56.6 2.7e-47 185.3
Bpe02g00909 . 6 156 Alfin-like Transcription Factor Family AT5G20510 55.4 1.1e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024921 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20889 PF12165 Alfin 1.50E-54 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00502 Bpe_Chr02 FPKM 0.482456 0.283183 2.576708 2.567198 1.443831 1.684672 0.38271 0.018209 0.0 0.113809