Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00502 ATGGAAAACGGTGCTTCGCCTAATGCGCTTACGGTTGAGGATATCTTTCGGGATCTTAAAGGTCGCAGGGCTGGCATGATTAAAGCTCTTACTACTGATTTTCTGAATGCAGAGAGGGAAAACCTCTGCCTTTATGGATATCCCGATGGGAATTGGGCTGTCAGTTTACCTGCCGAAGAAGTGCCTTCTGAGCTTCCAGAACCTGCACTGGGAATTAATTTTGCCAGAGATGGGATGCATGCGAAGGAGTGGGCATCGTTGGTTGCTGTCCACAGTGATTCATGGTTACTTTCTGTAGCCTTTTACTACGGTGCTAGGTTTGAATTTCGTCAAACTGATCGGATGCGTCTTTTTGATATGATAAACGATCTTCCAACAATATTTGAGGTTCTAAAGGAGTTAGCGGAGAAACAAAAGAAGACGAAGGCATCAGTTTCAAAACACAGCCGCAACAAGTTTATATCCAAATCAAAGATTTTCGCTCCTCTGCCAAATTTTGCATTTTGTTGGCTGACAATGCAGCAATGTACTGATTTTCAGGAAGAACTTTCACTGCCAATGCAAGTCGTGGATGAGGAAGATGGTGATGGACAGGAAGAAACTTTATGTGGAGCCTGTGATGAGAACGATGGAACTGATGAATTCTGGATCTGCTGTGACGCGTGTGAGAAGTGGTTCCATGGAAAATGTGTTAAGATCACCGCAGCAAGAGCAGAGCACATCAAGCATTACAAATGCCCGTCTTGCAGTAACAAGAGACCACGACAATAA 771 44.23 MENGASPNALTVEDIFRDLKGRRAGMIKALTTDFLNAERENLCLYGYPDGNWAVSLPAEEVPSELPEPALGINFARDGMHAKEWASLVAVHSDSWLLSVAFYYGARFEFRQTDRMRLFDMINDLPTIFEVLKELAEKQKKTKASVSKHSRNKFISKSKIFAPLPNFAFCWLTMQQCTDFQEELSLPMQVVDEEDGDGQEETLCGACDENDGTDEFWICCDACEKWFHGKCVKITAARAEHIKHYKCPSCSNKRPRQ 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3263991 3265646 - Bpe008342.2 Bpe02g00502 98651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00502 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Bpe02g00502 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Bpe02g00502 256 SUPERFAMILY FYVE/PHD zinc finger 192 254 IPR011011 -
Bpe02g00502 256 CDD PHD_AL_plant 202 252 IPR044104 -
Bpe02g00502 256 SMART PHD_3 202 250 IPR001965 -
Bpe02g00502 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
Bpe02g00502 256 Pfam Alfin 11 132 IPR021998 GO:0006355|GO:0042393
Bpe02g00502 256 Pfam PHD-finger 203 252 IPR019787 -
Bpe02g00502 256 PANTHER CPG BINDING PROTEIN 8 255 IPR045104 GO:0006355|GO:0042393
Bpe02g00502 256 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 8 255 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00502 Bpe14g00276 CCT
Bpe02g00502 Bpe14g00276 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00502 Bpe-Chr2:3263991 Bpe02g02185 Bpe-Chr2:23047068 2.60E-91 dispersed
Bpe14g00276 Bpe-Chr14:2783384 Bpe02g00502 Bpe-Chr2:3263991 1.82E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20889 PF12165 Alfin 1.50E-54 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00502 - - csin:114296613 332.798