Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00514 ATGCTTTCACGTTGGAAAGAAAATATGGGTTTACTCTGCAGCAAAAGCTGTAACTACAATAAAGCAGACGTCGAAGGGAATGCGCAGGCTGCAGATATAGAAAGGCGGATTGAACAAGAAACAAAGGCTGAAAAACATATTCAGAAACTTCTACTTCTTGGGGTTGGAGAGTCTGGGAAATCCACAATTTTTAAGCAGGCAAGCCTTTTTGCTCATTCAACTGATAAATTATACTGTCAAGTTCTGATTTTGATATTGTATGATGGGTCGAAGGAGCTCTCTCAAAATGACACTGATTCCTTGAAGTATGTCGTAACCAGTGAAAATAAGGAAATTGGGGAGAGACTATCTAATATAGGAGGCAGATTGGATTACCCTCGTCTAACAAAGGAGCTTGCACATGACGTGGAAACTTTGTGGAAGGATGTTGCTATACAGGAAACATATGCTCGCGGTAATGAGCTTCAGGTACCAGATTGTGCTCAATATTTCATGGGAAATTTGGAGCGATTGTCTGATGTAAATTATATTCCAACCAAGGAGGATGTTCTCCATGCAAGAGTTCGCACAACAGGGGTTGTGGAGATTCAGTTCAGCCCCGTGGGAGAAAATAAGAAGAGCGGGGAAGTATACCGGCTCTTTGATGTTGGAGGTCAGAGAAATGAGAGGAGAAAGTGGATCCATCTATTTGAAGGTGTTACAGCTGTAATCTTTTGTGCTGCTATTACTTTCAGATACGATCAAACTCTCTTTGAAGATGAGAGCAAGAATCGAATGATGGAAACAAAGGATCTCTTCGAGTGGGTGCTGAAACAAGAATGTTTTGAGAAAACGTCTTTCATGTTGTTTCTCAACAAATTTGATATATTCGAAAAGAAGGTTCTGAAGATTCCGCTCAATGTTTGCAAGTGGTTCAAAGATTACCAGCCAGTTTCAAACGGAAAGCAAGAGACTGAGCATGCTTACGAGTATGTTAAGAAAAAATTCGAGGAGTTGTATTTTCAGAGCACTGCCCCAGATCGTGTAGACCGGGTTTTTAAGGTCTACCGAACGACTGCACTTGATCAGAAGCTCGTGAAAAAGACGTTCAAGCTCATTGACGAGACTTTGCGGCGAAGAAATCTCTTTGAGGCCGGTTTATTGTGA 1146 41.36 MLSRWKENMGLLCSKSCNYNKADVEGNAQAADIERRIEQETKAEKHIQKLLLLGVGESGKSTIFKQASLFAHSTDKLYCQVLILILYDGSKELSQNDTDSLKYVVTSENKEIGERLSNIGGRLDYPRLTKELAHDVETLWKDVAIQETYARGNELQVPDCAQYFMGNLERLSDVNYIPTKEDVLHARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAITFRYDQTLFEDESKNRMMETKDLFEWVLKQECFEKTSFMLFLNKFDIFEKKVLKIPLNVCKWFKDYQPVSNGKQETEHAYEYVKKKFEELYFQSTAPDRVDRVFKVYRTTALDQKLVKKTFKLIDETLRRRNLFEAGLL 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3363431 3367011 - Bpe008354.1 Bpe02g00514 98663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00514 381 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 9 381 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 CDD G-alpha 48 375 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 378 IPR027417 -
Bpe02g00514 381 SMART galpha_1 27 380 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 Gene3D - 49 368 IPR027417 -
Bpe02g00514 381 ProSiteProfiles G-alpha domain profile. 46 381 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 Gene3D - 74 189 IPR011025 GO:0007165
Bpe02g00514 381 PRINTS Alpha G protein (transducin) signature 176 198 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 PRINTS Alpha G protein (transducin) signature 234 262 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 PRINTS Alpha G protein (transducin) signature 211 228 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 PRINTS Alpha G protein (transducin) signature 280 289 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 PRINTS Plant G protein alpha subunit signature 196 211 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe02g00514 381 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe02g00514 381 PRINTS Plant G protein alpha subunit signature 267 278 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe02g00514 381 PRINTS Plant G protein alpha subunit signature 316 331 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe02g00514 381 PRINTS Plant G protein alpha subunit signature 333 345 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe02g00514 381 SUPERFAMILY Transducin (alpha subunit), insertion domain 83 188 IPR011025 GO:0007165
Bpe02g00514 381 Pfam G-protein alpha subunit 30 369 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe02g00514 381 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 9 381 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00514 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - pvy:116145770 634.024
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00514 Bpe04g00106 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00514 Bpe-Chr2:3363431 Bpe07g00239 Bpe-Chr7:1694809 3.89E-47 dispersed
Bpe02g00514 Bpe-Chr2:3363431 Bpe04g00106 Bpe-Chr4:741475 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00514 Bpe_Chr02 FPKM 4.065895 4.973828 2.775212 2.741722 11.550931 10.949016 11.913803 1.005219 1.179421 1.171319