Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00521 ATGGTTTGCGAGTTGGAGAGTGACATCATGGAAGATATGGACATTGAGGACCTTCCCTCGATGTGGCCTGAAGATGTAGTGTCTAATGTCGGTAAGCAATTCAATGTAGAAAGGCCAAGAGGAGATCAAGATATGCTGGAAGAAGTTACCATAATAGAGGAGCCAACAATAGTTGATTTCAAACGCCTTTTGGAGTTGACCAACTACACTGAGAAAGGGTCTTCGCAATTGCAATATCTTGCGAAACAATGGGAATATAAGCAGGCAAATGCTGTTCGTCTTCTTAAAGAAGAACTTGACATTATGAACAAACAAAGGCAGGAATTTGAGCTCAAGGAATTGAAGATAGTAGAGGAGCATCTCTTTGAGGAAGAAAGATATGGTGATTATAAGCGTCCAATTTCTATTTTGGAAGAAGTTTATGACTTATGGCAAGATGTTCCTCAAAGAAAAAATGATTTTGTTTTTCAAAATAAGAGAGTTGAAATAGACCCAGAGTATGATACCATAACATATTGGAAGCAGAAGGCAGTGAAGTTGGAGAAATTATTAGAAGCCAGTTTGCAGCGAGAGCATATTTTAACAGATAAGCTCCAGGAAAGCATAAAAAATATCGAGAAGCAGACATCACCAGTTGAGGAGTTATCCCAGATTTTGAAAAGAGCAGACAATTTTTTGCATTTCGTTCTTCAGAATGCTCCTGTTGTTATTGGTCATCAGGATAAAGAATTGCGATATCGTTTTATCTATAATCATTTTCCAAGTTTGGATGAGGAGGATATTATTGGAAAAACAGATGTTGAAATTTTTCATGGAGCCGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTTCTGGAAAAAAGAATACCTGCAAAGAGGGAAATTACTTTTGACACCCCGTTATTTGGGTTAAAGACATTCTTGATATATGTAGAACCTGTTTTCAGTAAGGCCGGGGAGACAATTGGGATAAACTATATGGGAATGGATGTAACTGATCAGGTCAGGAAACGAGAAAAGATGGCAAAACTCAGAGAGGAGATAGCAGTACAAAAGGCCAAGGAAACAGAACTAAACAAAACCATTCATATTACAGAGGAGACAATGAGGGCAAAGCAAATGCTAGCAACGATGTCTCATGAGATAAGATCTCCTCTATCTGGGGTTGTTAGTATGGCTGAGATTCTTGCCACTACAAAACTTGATCGGGAGCAGCGACAGCTTTTGGATGTTATGCTGTCTTCAGGGGATTTGGTGATTCAACTTATAAATGACATCTTGGATCTTTCGAAGGTTGAGTCAGGAGTTATGAAACTGGAAGCTACAAAATTCCGGCCTAGAGAGGTTGTGAAGCATGTCCTCCAGACTGCAGCTGCATCACTGCAGAAATGTTTACTCTTGGAAGGCCATGTAGCTGATGACGTTCCTGTAGAGTATTTAACCCATGAAGCAATTTTATTATTCAATGATTCATACATATTTCATCACATTTTAAGCATTGTATTATTATTACAGGTCATTGGAGATGTTTTGAGGATTAGGCAAATTCTTACTAACTTGATAAGCAATGCAATCAAGTTTACTCATCAAGGAAAGGTTGGAATTAAGATTTATGTGGTACCAGATCAACTTTCTTGGAAAGGAGAAGAATGTCATCAGAGGTTTAATGCTCAACATTCCACAGTTTTATCAACTGAATTGGAAGAAGATAAATGTCCGTCAGTACCTCAGAATAGCTCAGATAGAAAAAATTCTTTCCAAAAACAAGGGGATAGTCCTCAACAAAATCATTCGTTTTGCCCTGATATTAGAAGCACTGGTAACTGTGAACCTTTGGTGACTGGAAAAAGGGAGGAACATCACCAGGCACCCCAAACAACTGTGTGGATTCGCTGTGATGTTTACGACACAGGAATTGGAATACCAGAAAATGCATTACCTACACTTTTTAAAAAGTACATGCAAGTTAGTGCTGATCATGCCAGAAAGTACGGAGGGACGGGGCTGGGATTAGCAATATGCAAACAACTGCCCCTAAGAACTTTTCTTAGCTTTATCGTTTCTTTATTATTTGGTCTTTCATTGTTGCAGGTTGAGCTGATCGGTGGTCGTTTGACAGTGTCTAGCCAAGAGCATCGTGGATCTACTTTTACATTTGTGTTACCATACAAGCTTTCAACCGCTGCCGACGCTACTGATGATTCTGATGAGATCGCAGATGTGACAAATTACGATGCGGCAAATAGTGATTCATCTGAAGGGTTTTTCCAATTTCATCCTGGCAGTTTTGGTTCGCTAACCTCTTCTAACGGATGTAGCAGAACTCAAAATTTGTCGCATAACAACGGGTATGCAACGTCAAAAGAAAATGGATTACGATGGAATTCTAATTCATTTCTCTCCAACGCAAGATCGAAAGGGATGCCTTTTCTTGAGGATGCCTGTTCAGTAGCTGATTCTACAACATTAGAGGAATCAAAAACTACACAAAATCATAATGAGAATTCAGTTTGTGGAGTGAGCCACTGTCAAGATAAGACAAATGGTCAATCCCTGAATGATTGTAATGATTCACCTCGTAGCAAGGGAAAAGAAAGAGAAGAGTTCATATCAAAAGGGACATTTGAACCCCAAGTAAATTCCAATTGGAAGGAGAAATCTGATTCCAGATTTCATTGCGTGAACAATGTCAATTCAGAAGTATCTCAATCAGCATTGAAACCTAGAATCCTTCTTGTGGAGGACAACAAGACCAATATAATGGTTACACAATCCATGATGAAGAAGTTGGGACATAGCATTGATGTTGTCACCAATGGAGCTGATGCAGTGCGAGCAGTTCAATGTTGTCACTACGATCTTGTTCTCATGGATGTGTGCATGCCGATTATGGATGGGCTCCAAGCTACGAGATTAATTCGTTCTTTTGAAGAAATAGGTAACTGGGATGCCGCAGAAAAGGCTGGAATCGAAACGGTGCATGGCCGGACTGTATCCAGTGGCAAGCGTATTCCCATAGTGGCTATGACAGCGAATGCGTCGGCTGAAAGTGCAGGAGAGTGCTTTGCAAATGGTATGGACTCTTTTGTTTCAAAGCCCGTCACTTTCCCACACTTAAAACAGTGCCTTGAACAATACTTAACGTGA 3150 39.78 MVCELESDIMEDMDIEDLPSMWPEDVVSNVGKQFNVERPRGDQDMLEEVTIIEEPTIVDFKRLLELTNYTEKGSSQLQYLAKQWEYKQANAVRLLKEELDIMNKQRQEFELKELKIVEEHLFEEERYGDYKRPISILEEVYDLWQDVPQRKNDFVFQNKRVEIDPEYDTITYWKQKAVKLEKLLEASLQREHILTDKLQESIKNIEKQTSPVEELSQILKRADNFLHFVLQNAPVVIGHQDKELRYRFIYNHFPSLDEEDIIGKTDVEIFHGAGVKESQDFKREVLEKRIPAKREITFDTPLFGLKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILATTKLDREQRQLLDVMLSSGDLVIQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKCLLLEGHVADDVPVEYLTHEAILLFNDSYIFHHILSIVLLLQVIGDVLRIRQILTNLISNAIKFTHQGKVGIKIYVVPDQLSWKGEECHQRFNAQHSTVLSTELEEDKCPSVPQNSSDRKNSFQKQGDSPQQNHSFCPDIRSTGNCEPLVTGKREEHHQAPQTTVWIRCDVYDTGIGIPENALPTLFKKYMQVSADHARKYGGTGLGLAICKQLPLRTFLSFIVSLLFGLSLLQVELIGGRLTVSSQEHRGSTFTFVLPYKLSTAADATDDSDEIADVTNYDAANSDSSEGFFQFHPGSFGSLTSSNGCSRTQNLSHNNGYATSKENGLRWNSNSFLSNARSKGMPFLEDACSVADSTTLEESKTTQNHNENSVCGVSHCQDKTNGQSLNDCNDSPRSKGKEREEFISKGTFEPQVNSNWKEKSDSRFHCVNNVNSEVSQSALKPRILLVEDNKTNIMVTQSMMKKLGHSIDVVTNGADAVRAVQCCHYDLVLMDVCMPIMDGLQATRLIRSFEEIGNWDAAEKAGIETVHGRTVSSGKRIPIVAMTANASAESAGECFANGMDSFVSKPVTFPHLKQCLEQYLT 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3397178 3403390 + Bpe008361.1 Bpe02g00521 98670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00521 1049 Gene3D - 359 436 - -
Bpe02g00521 1049 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 505 1048 - -
Bpe02g00521 1049 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 6 481 - -
Bpe02g00521 1049 Gene3D PAS domain 213 348 - -
Bpe02g00521 1049 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Bpe02g00521 1049 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 509 724 IPR003594 -
Bpe02g00521 1049 ProSiteProfiles Histidine kinase domain profile. 378 726 IPR005467 -
Bpe02g00521 1049 MobiDBLite consensus disorder prediction 572 604 - -
Bpe02g00521 1049 Gene3D - 437 730 IPR036890 -
Bpe02g00521 1049 CDD REC_hyHK_CKI1_RcsC-like 911 1044 - -
Bpe02g00521 1049 Gene3D - 903 1049 - -
Bpe02g00521 1049 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Bpe02g00521 1049 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 505 1048 - -
Bpe02g00521 1049 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 6 481 - -
Bpe02g00521 1049 SUPERFAMILY CheY-like 909 1048 IPR011006 -
Bpe02g00521 1049 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Bpe02g00521 1049 Coils Coil 92 112 - -
Bpe02g00521 1049 Coils Coil 342 362 - -
Bpe02g00521 1049 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 496 723 IPR036890 -
Bpe02g00521 1049 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Bpe02g00521 1049 Pfam Response regulator receiver domain 911 977 IPR001789 GO:0000160
Bpe02g00521 1049 ProSiteProfiles Response regulatory domain profile. 910 1048 IPR001789 GO:0000160
Bpe02g00521 1049 SUPERFAMILY PYP-like sensor domain (PAS domain) 216 333 IPR035965 -
Bpe02g00521 1049 SMART REC_2 909 1044 IPR001789 GO:0000160
Bpe02g00521 1049 SMART HKATPase_4 509 726 IPR003594 -
Bpe02g00521 1049 MobiDBLite consensus disorder prediction 569 604 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00521 - - - zju:107420093 1312.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00521 Bpe-Chr2:3397178 Bpe03g00033 Bpe-Chr3:566964 4.01E-15 dispersed
Bpe02g00521 Bpe-Chr2:3397178 Bpe05g00945 Bpe-Chr5:22382722 1.00E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g656 Blo01g01429 . Bda01g00649 . . Bpe02g00521 . Bma01g02184 . . Cma01g01683 . Car09g00334 . . . Cpe06g00274 . . . . . . . Cla05g01652 Cam05g1764 Cec05g1770 Cco05g1829 Clacu05g1754 Cmu05g1639 Cre05g1767 Cone4ag1716 Cone7ag1634 . . Lsi04g01364 . . . . . . . . . . . Sed05g1812 Cmo01g01734 Cmo09g00388 Cma09g00387 . Car01g01298 . . Cpe02g00308 Bhi09g03051 Tan01g3520 Cmetu07g0647 . . . . . . . . . . . . . . Cme07g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00409 . 493 1672 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1452.6
Bpe15g00478 . 564 1761 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1403.3
Bpe03g00033 . 17 996 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1351.3
Bpe14g00730 . 303 1276 Histidine Kinase Gene Family AT2G01830 52.3 6.5e-276 947.2
Bpe05g00945 . 57 1056 Histidine Kinase Gene Family AT2G01830 50.3 2.2e-263 905.6
Bpe02g00521 . 1 1048 Histidine Kinase Gene Family AT5G10720 53.8 5.4e-279 957.2
Bpe02g01845 . 2 1121 Histidine Kinase Gene Family AT1G09570 77.2 0.0e+00 1759.2
Bpe07g00650 . 12 1119 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1253.0
Bpe05g00798 BCT 34 1122 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1168.3
Bpe13g00697 BCT 29 1120 Histidine Kinase Gene Family AT1G09570 52.9 0.0e+00 1158.3
Bpe02g00962 . 36 1111 Histidine Kinase Gene Family AT1G09570 50.4 6.9e-313 1070.1
Bpe05g00798 BCT 12 1058 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1636.3
Bpe13g00697 BCT 30 1084 Histidine Kinase Gene Family AT2G18790 75.0 0.0e+00 1599.7
Bpe02g00962 . 15 1050 Histidine Kinase Gene Family AT2G18790 61.9 0.0e+00 1279.6
Bpe11g01109 . 15 1045 Histidine Kinase Gene Family AT2G18790 58.4 0.0e+00 1214.5
Bpe07g00650 . 23 1074 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1111.3
Bpe02g01845 . 22 1056 Histidine Kinase Gene Family AT2G18790 51.2 1.4e-308 1055.8
Bpe07g00650 . 10 1115 Histidine Kinase Gene Family AT5G35840 62.3 0.0e+00 1398.6
Bpe13g00697 BCT 21 1122 Histidine Kinase Gene Family AT5G35840 51.4 0.0e+00 1124.4
Bpe05g00798 BCT 37 1118 Histidine Kinase Gene Family AT5G35840 52.2 0.0e+00 1119.4
Bpe02g01845 . 10 1116 Histidine Kinase Gene Family AT5G35840 50.2 0.0e+00 1107.8
Bpe05g00798 BCT 8 1118 Histidine Kinase Gene Family AT4G16250 74.1 0.0e+00 1655.2
Bpe13g00697 BCT 30 1122 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1642.5
Bpe02g00962 . 35 1111 Histidine Kinase Gene Family AT4G16250 60.1 0.0e+00 1305.0
Bpe11g01109 . 20 1107 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1245.0
Bpe07g00650 . 24 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1144.8
Bpe02g00962 . 14 1112 Histidine Kinase Gene Family AT4G18130 63.9 0.0e+00 1396.3
Bpe11g01109 . 14 1108 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1327.0
Bpe05g00798 BCT 37 1119 Histidine Kinase Gene Family AT4G18130 59.1 0.0e+00 1258.8
Bpe13g00697 BCT 38 1116 Histidine Kinase Gene Family AT4G18130 58.2 0.0e+00 1249.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20891 PF02518 HATPase_c 3.00E-22 CL0025 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00521 Bpe_Chr02 FPKM 5.464774 6.430599 5.203851 4.444931 38.885368 32.130596 35.819714 6.447429 6.138355 5.961445