Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00532 CTAATCTCAATCAGTATGTCCTCGAGAAACTCTTCTTACAGTAACCCAATACCTTGCAAGCATCTTGCAGATTATAAGCTTAGGTATGGGTTAAACGCCTATAAATCAATCCAAAAATGCCTCAAAACTACCCCGAATGGGAGAACTCGAATTCAAAACCTAGATACAGAGATACCCAAATGCTGTTCTTGTAATAGGTACGAAGGTAGACTTTATTTTTGCTTGATTTGCTCTTCAATCTCTTGTTCGAACCACACCCTTTCGCATATAGGATCGGAAGATAGCCACGTTATTGCCGTGGACGTCGATAGGGCTGAGCTCTACTGCTGCGTGTGCTCTGATCAGGTCTATGATCCGGATTTCGACCAGTGTGTGATGACGAAACACATCAATGGGTTCCCCAAAGATTTGGAAGAATCCGAAAGTATTGGAGAAAGGTTGAGTAAGAGGAGGAGATTGAGTTCGGTGTTTGGGGAAGAGTTGCTCGATTCGAAGAAATTGAAATCCTTAGATTCTCTGAGAGATCTGAGACAGAAATCGTGTTATCCATTAGGTTTGAGGGGTTTGAATAATTTGGGCAGTACTTGTTTCATGAATTCCATTTTGCAAGTACTGATTCATTCGCCCCCTTTTAGAAATTATTTCTTGACTGATCAGCACAATCGACAAACCTGCCGGAAAAGATCAGCCGACCACCTTTGTTTGCCGTGTGACATTGCTGCCCTTTTCTCGGCTGTATTTTCCGAGGATCGGACCCCTTATACTCCTGCTCCATTTCTTTACAGTTGGTGGCAGCACTCGACCAATCTAGCCAGTTACGAGCAGCAGGACGCCCATGAATTCTTCATTTCCCTACTAGACAGCATCCACGAGAAAGAGGTGAAAGCAAGAAATCACATTAGAGTAGGTCATGGAGATTGCAAATGTATTGCTCACAAGGTATTCTCTGGACAATTAAGATCAGATGTCACTTGTATGACTTGTGGATTTACTTCAACAACATACGACCCATGTCTTGATATTTCGCTCGACTTGAACAAGAGAAATTACTCTTCGAGAGATATGGCCGATAAATCTGTCAAACCCGCAGAAACAAACAGTATATCGACGCTGTATGGATGTTTGGATTTGTTCACAAGGCTGGAGAAATTGGGATCGGATCAGAAACTTTTTTGCCAAAACTGTCAAGAACGACAGAATTCGTTGAAGCAAATGTCGATAAGAAGGCTTCCATTAGTCTTGAGCTTACACATGAAGCGCTTCGAGCATTCGACTGTCAACAACATGTCAAAAAAGATCGATCGATATTTGCACTTCCCATTTTCCTTGGACATGATGCCATATTTGTCGTCTTCGATTGTGAGAAACAGATTTGGAAACAGGATCTTCGCCTTCGAAGGTGACGAATCTGATGTTTCAACTGAGTTTGAGATTTTTGCTGTGATTGCTCATTTTGGCACCCTCGAATCGGGTCATTACGTGACTTATTTACGATTAAGGGACCAATGGTACAAATGTGACGATGCTTGGATCACAAAGGTGGATGAAGGGGCGGTGAGAAATTCACAATGTTATATGATGTTTTATCTGCAGAAAAAACTCTGCTGCAAATCGAACGATGATTTTGGTTGCCTGCTGATTTCACCCTGCAGCGAGTCGTACCATTCCGTTGCTGGTTGCTGCTGA 1686 42.59 LISISMSSRNSSYSNPIPCKHLADYKLRYGLNAYKSIQKCLKTTPNGRTRIQNLDTEIPKCCSCNRYEGRLYFCLICSSISCSNHTLSHIGSEDSHVIAVDVDRAELYCCVCSDQVYDPDFDQCVMTKHINGFPKDLEESESIGERLSKRRRLSSVFGEELLDSKKLKSLDSLRDLRQKSCYPLGLRGLNNLGSTCFMNSILQVLIHSPPFRNYFLTDQHNRQTCRKRSADHLCLPCDIAALFSAVFSEDRTPYTPAPFLYSWWQHSTNLASYEQQDAHEFFISLLDSIHEKEVKARNHIRVGHGDCKCIAHKVFSGQLRSDVTCMTCGFTSTTYDPCLDISLDLNKRNYSSRDMADKSVKPAETNSISTLYGCLDLFTRLEKLGSDQKLFCQNCQERQNSLKQMSIRRLPLVLSLHMKRFEHSTVNNMSKKIDRYLHFPFSLDMMPYLSSSIVRNRFGNRIFAFEGDESDVSTEFEIFAVIAHFGTLESGHYVTYLRLRDQWYKCDDAWITKVDEGAVRNSQCYMMFYLQKKLCCKSNDDFGCLLISPCSESYHSVAGCC 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3442718 3445021 + Bpe008371.1 Bpe02g00532 98681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00532 561 SUPERFAMILY RING/U-box 17 123 - -
Bpe02g00532 561 Gene3D Cysteine proteinases 182 536 - -
Bpe02g00532 561 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 188 203 IPR018200 GO:0004843|GO:0006511
Bpe02g00532 561 ProSiteProfiles Zinc finger UBP-type profile. 17 137 IPR001607 GO:0008270
Bpe02g00532 561 Pfam Ubiquitin carboxyl-terminal hydrolase 188 529 IPR001394 GO:0004843|GO:0016579
Bpe02g00532 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 133 IPR013083 -
Bpe02g00532 561 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 187 532 IPR028889 -
Bpe02g00532 561 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 10 554 - -
Bpe02g00532 561 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 554 - -
Bpe02g00532 561 Pfam Zn-finger in ubiquitin-hydrolases and other protein 61 120 IPR001607 GO:0008270
Bpe02g00532 561 SUPERFAMILY Cysteine proteinases 185 529 IPR038765 -
Bpe02g00532 561 SMART Zf_UBP_1 60 107 IPR001607 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00532 K11366 USP22_27_51, UBP8; ubiquitin carboxyl-terminal hydrolase 22/27/51 [EC:3.4.19.12] - csv:101210858 830.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00765 Bpe-Chr1:7446066 Bpe02g00532 Bpe-Chr2:3442718 0 dispersed
Bpe02g00532 Bpe-Chr2:3442718 Bpe04g00420 Bpe-Chr4:2709267 3.46E-31 dispersed
Bpe04g01101 Bpe-Chr4:8757614 Bpe02g00532 Bpe-Chr2:3442718 1.63E-11 dispersed
Bpe06g00285 Bpe-Chr6:13848083 Bpe02g00532 Bpe-Chr2:3442718 3.53E-11 dispersed
Bpe11g00510 Bpe-Chr11:3937044 Bpe02g00532 Bpe-Chr2:3442718 1.25E-09 dispersed
Bpe13g01069 Bpe-Chr13:16284252 Bpe02g00532 Bpe-Chr2:3442718 3.71E-11 dispersed
Bpe02g00532 Bpe-Chr2:3442718 Bpe03g00860 Bpe-Chr3:28400383 4.29E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g597 Blo01g01420 . Bda01g00659 . . Bpe02g00532 . . . . . . Car09g00347 . . . . . . . . . . . Cla05g01666 Cam05g1780 Cec05g1786 Cco05g1846 Clacu05g1769 Cmu05g1653 Cre05g1782 . Cone7ag1656 . . Lsi04g01349 Csa03g04488 Chy04g00212 . . . . . . . . . Sed13g1952 . Cmo09g00400 . . . . . . Bhi09g03035 Tan01g3536 Cmetu07g1151 . Hepe01g1951 Mch11g0488 . . . . . . . . . . . Cme07g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012836 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 0 1 1 1 0 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00532 Bpe_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.330509 0.0 0.0 0.0 0.0