Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00536 ATGTCGGACGAGGAGCATCACTTCGAGTCCAAGGCCGACGCAGGTGCCTCCAAAACTTATCCTCAGCAGGCTGGAACAATCCGCAAGAACGGTTACATAGTTATCAAGGGTCGTCCCTGCAAGGTTGTAGAGGTTTCTACTTCCAAGACAGGGAAGCATGGACATGCAAAGTGCCACTTTGTGGCTATTGATATATTTACTTCTAAGAAACTCGAGGATATTGTCCCATCATCCCACAACTGCGATGTTCCACATGTTACTCGTACTGATTATCAGCTGATTGACATATCTGAAGATGGATTTTTGAGTCTTTTGACTGATTCAGGTAGCACAAAGGATGACTTGAGGCTTCCTACTGATGAGAGCCTGCTTAGTCAGGTAAACTACATGAACTCGTATCTATTGCATTTGCGCACATATTGGAAAAGAACAGACAATGATTTTTTCTCATTTGTTTTTCGTGCATTCATTCAGATTAAGGATGGATTTGCTGAGGGAAAGGACCTTGTGCTGACAGTCATGTCATCGATGGGAGAAGAACAAATCTGTGCCCTCAAGGATATTGGCCCCAAAAACTAA 579 43.52 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTSKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFLSLLTDSGSTKDDLRLPTDESLLSQVNYMNSYLLHLRTYWKRTDNDFFSFVFRAFIQIKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKN 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3464645 3466650 - Bpe008375.2 Bpe02g00536 98685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00536 192 PANTHER BNAA07G09420D PROTEIN 1 123 - -
Bpe02g00536 192 SUPERFAMILY Nucleic acid-binding proteins 86 129 IPR012340 -
Bpe02g00536 192 Gene3D - 157 190 IPR012340 -
Bpe02g00536 192 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 159 188 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g00536 192 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 123 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g00536 192 SMART eIF_5a_2 85 186 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g00536 192 CDD S1_eIF5A 86 188 - -
Bpe02g00536 192 PANTHER BNAA07G09420D PROTEIN 159 188 - -
Bpe02g00536 192 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 158 186 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g00536 192 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 128 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe02g00536 192 TIGRFAM eIF_5A: translation elongation factor IF5A 17 121 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g00536 192 MobiDBLite consensus disorder prediction 1 21 - -
Bpe02g00536 192 PIRSF Transl_init_eIF5A 154 189 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g00536 192 PIRSF Transl_init_eIF5A 1 146 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe02g00536 192 Gene3D - 86 130 IPR012340 -
Bpe02g00536 192 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Bpe02g00536 192 Gene3D - 1 85 IPR014722 -
Bpe02g00536 192 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00536 Bpe04g00082 CCT
Bpe02g00536 Bpe14g00600 CCT
Bpe02g01262 Bpe02g00536 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00536 Bpe-Chr2:3464645 Bpe10g00890 Bpe-Chr10:14632518 6.46E-106 dispersed
Bpe14g00600 Bpe-Chr14:4994417 Bpe02g00536 Bpe-Chr2:3464645 2.06E-44 wgd
Bpe02g00536 Bpe-Chr2:3464645 Bpe02g01262 Bpe-Chr2:16078949 9.41E-107 wgd
Bpe02g00536 Bpe-Chr2:3464645 Bpe04g00082 Bpe-Chr4:630180 5.07E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00536 K03263 K02180 mnt:21396395 297.36