Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00545 ATCAGTTATCAGATGTCAATGGAAGGAAGCGTCGTTGCGTATCCTACAGAAGCCCTTCCATGCCCAAAAACACCATTGCAGAACCCAGTAGAGTGCAAGCAGAAGACAGTGGAGGAAGACGAAGAAGATAAGGACCGAGAGAGAGAAGGAAAACCCAAACCCTCCTTAGATCTAATCAGAAGATCCAGTCAAGAACTTAATCTCATTGAAAATTTGGAGATGGTTTGTTCGCCTGATCAAACGTCATCGGAACCCAATCACGATCACAGCCTAGCCGGCGACACGGCGGAGCCACGAGTTTTCTCATGCAACTACTGTCAGCGAAAGTTTTACAGCTCGCAGGCGCTTGGCGGCCACCAAAACGCCCACAAACGAGAGAGAAGTCTGGCGAAAAGAGGACATCGAATTGGGTCGTCGTCATCATTTATGTCTACGACAGCTTTTGGACACCATCCCTACTTCCATCCCCACCATTACTCCACCTTAGTATCTCTTCCCGACATCCATGGCTCCTTCAACAGATCTCTTGGAATTAAGGTTCACTCGCTGGTTAGTAAGCCATCTGAGCAATTCCCATCATCTTCTTTATTCGGAGGTGGGTTACAATCGGGACCCGCCATCGATCAACGGCCGGGAATAGGGAAGCTGAGACAGGAGATCATCGACCCCATCCGTACACACGTAGCAACCGGATTGAGTGCGAGAAGCAGCGTCGGTAGATTCGAAACGGGACGGAGGAAGTCCATGGAAAGAACAGAAGATGATCGAATCGGAGGGGGCTTCTGGGGTGGTAATGGAGGCGTGTTGATAATGTCTAAAGAAGAGGAGACGAAAAATCTTGACCTATCTTTGAAGCTGTAA 861 49.01 ISYQMSMEGSVVAYPTEALPCPKTPLQNPVECKQKTVEEDEEDKDREREGKPKPSLDLIRRSSQELNLIENLEMVCSPDQTSSEPNHDHSLAGDTAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSLAKRGHRIGSSSSFMSTTAFGHHPYFHPHHYSTLVSLPDIHGSFNRSLGIKVHSLVSKPSEQFPSSSLFGGGLQSGPAIDQRPGIGKLRQEIIDPIRTHVATGLSARSSVGRFETGRRKSMERTEDDRIGGGFWGGNGGVLIMSKEEETKNLDLSLKL 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3536132 3536992 + Bpe008384.1 Bpe02g00545 98694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00545 286 MobiDBLite consensus disorder prediction 16 58 - -
Bpe02g00545 286 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 286 IPR044246 GO:0009788
Bpe02g00545 286 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Bpe02g00545 286 MobiDBLite consensus disorder prediction 33 58 - -
Bpe02g00545 286 MobiDBLite consensus disorder prediction 116 137 - -
Bpe02g00545 286 SUPERFAMILY beta-beta-alpha zinc fingers 98 128 IPR036236 -
Bpe02g00545 286 Gene3D Classic Zinc Finger 85 150 - -
Bpe02g00545 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Bpe02g00545 286 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00545 - - - dzi:111300449 195.667
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00685 Bpe-Chr1:4972072 Bpe02g00545 Bpe-Chr2:3536132 4.88E-17 dispersed
Bpe02g00545 Bpe-Chr2:3536132 Bpe03g00032 Bpe-Chr3:547423 4.50E-21 dispersed
Bpe09g00444 Bpe-Chr9:11441568 Bpe02g00545 Bpe-Chr2:3536132 5.23E-10 dispersed
Bpe02g00545 Bpe-Chr2:3536132 Bpe07g00261 Bpe-Chr7:1880993 1.59E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g525 . . Bda01g00760 . . Bpe02g00545 . . . . . . . . Sed11g1150 . . Bhi04g00040 Tan02g2755 Cmetu03g0839 . Hepe10g0223 . Lcy13g1820 . . . . . . . . . . . . . . . . . . . . . . . Sed06g2059 . . . . . . . . Bhi09g02982 Tan01g3585 Cmetu07g2142 . Hepe01g1980 Mch11g0516 . . . . . . . . . . . Cme07g00107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003781 5 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20893 None None None None Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe02g00545 Bpe_Chr02 FPKM 4.389307 5.926064 1.958728 1.521208 0.819757 0.539578 1.182458 0.734601 0.472059 0.410641