Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00548 CCTCTCTACTTCGTGATGGCCTACCACAACCATCTCTCCCAAGACCTTCCTCTCCACCGCTTCACGGACCAACCCCAGCAACAGCAGAACGCGCCATTATCGGAAAATTCGCTGCGGACTATTTTGCCTGATCAGTTGACCGCCCACGCTTCGCCGGACCCGACCTCTAAGAATCACCACCACCATCATCACCCACTTCAAACGGCGCCCAATTGGCTGAACAACGCACTCCTCCGCACCCAAAATCCTCACTCCCACTTCTCTACCGACACCACAACTACCGCTACCAACAACGCCAATACCAATTTCCTCAACCTCCATTCCGCTGCGTCCGATTCCCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCCCTATCCTCCACCGAAACCACAGCGACGTCATCGACGATGTGACCGCCGGAGATGCCTTGATAGGGGCCTCTACCGGAACGCTATCGCACGAATCGGCTGAGTTGAAGAACAATGCAAACAGCGGGGAAGCTTTGAACAAGGGCGATGGTGTGGGGGTGGAAGCAGGTGGCGACGGAAGTGGGGGAGAAGGGATTGTGAATTGGCAGAATGCGAGGTACAAGGCTGAGATTCTGGGTCATCCACTTTACGAGCAGCTTCTTTCAGCCCATGTCGCCTGTCTTCGAATTGCAACTCCCGTCGATCAGTTGCCGAGGATCGATGCACAGCTCGCACAGTCTCAGAACGTAGTGACAAAATACTCGGCCTTGAGCCATGGTGCTCAGTCCATGGTTGGGGACGAGAAAGAGCTTGATCAGTTCATGACTCATTATGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACAACATGTTCGCGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGACATCGAGCAATCCCTTCAAAGCTTAACCGGAGTATCCCCAGGTGAAGGTACAGGTGCTACAATGTCCGACGATGACGACGACCAATTAGACAGCGATGTCAATTTGTTCGACGGAAGTTTGGATGGTCATGATACCATGGGATTGGGTCCTCTTATCCCCACAGAAAGTGAAAGATCCTTAATGGAGAGGGTTAGGCAAGAACTGAAGCATGAACTTAAGACGGGTTACAAGGAGAAAATTGTAGATATAAGAGAGGAGATTTTGCGAAAGAGAAGAGCTGGTAAGCTCCCTGGTGATACCACTTCTGTCTTAAAATCATGGTGGCAATCACATTCAAAATGGCCATATCCTACGGAGGAAGACAAGGCAAAATTGGTGCAGGAAACTGGCCTGCAGTTGAAGCAGATAAACAACTGGTTCATCAATCAGAGGAAGAGAAACTGGCACAGTAATCCTTCTACTTCTACAAACTTGAAGAGCAAACGCAAAAGGTAA 1386 50.58 PLYFVMAYHNHLSQDLPLHRFTDQPQQQQNAPLSENSLRTILPDQLTAHASPDPTSKNHHHHHHPLQTAPNWLNNALLRTQNPHSHFSTDTTTTATNNANTNFLNLHSAASDSPASHSSNQWLSRPILHRNHSDVIDDVTAGDALIGASTGTLSHESAELKNNANSGEALNKGDGVGVEAGGDGSGGEGIVNWQNARYKAEILGHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYSALSHGAQSMVGDEKELDQFMTHYVLLLCSFKDQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDDDQLDSDVNLFDGSLDGHDTMGLGPLIPTESERSLMERVRQELKHELKTGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTEEDKAKLVQETGLQLKQINNWFINQRKRNWHSNPSTSTNLKSKRKR 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3559863 3563188 + Bpe008387.1 Bpe02g00548 98697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00548 461 SUPERFAMILY Homeodomain-like 386 450 IPR009057 -
Bpe02g00548 461 Pfam KNOX2 domain 256 306 IPR005541 GO:0003677|GO:0005634
Bpe02g00548 461 Pfam KNOX1 domain 198 239 IPR005540 GO:0003677|GO:0005634
Bpe02g00548 461 MobiDBLite consensus disorder prediction 441 461 - -
Bpe02g00548 461 Pfam ELK domain 364 385 IPR005539 GO:0003677
Bpe02g00548 461 MobiDBLite consensus disorder prediction 47 68 - -
Bpe02g00548 461 SMART ELK_2 364 385 IPR005539 GO:0003677
Bpe02g00548 461 SMART HOX_1 386 451 IPR001356 GO:0003677
Bpe02g00548 461 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 57 461 - -
Bpe02g00548 461 Gene3D - 385 446 - -
Bpe02g00548 461 SMART KNOX1_2 196 240 IPR005540 GO:0003677|GO:0005634
Bpe02g00548 461 Pfam Homeobox KN domain 404 443 IPR008422 GO:0003677|GO:0006355
Bpe02g00548 461 CDD homeodomain 387 448 IPR001356 GO:0003677
Bpe02g00548 461 SMART KNOX2_2 252 307 IPR005541 GO:0003677|GO:0005634
Bpe02g00548 461 ProSiteProfiles ELK domain profile. 364 384 IPR005539 GO:0003677
Bpe02g00548 461 ProSiteProfiles 'Homeobox' domain profile. 384 447 IPR001356 GO:0003677
Bpe02g00548 461 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00548 Bpe-Chr2:3559863 Bpe08g00867 Bpe-Chr8:11044130 7.20E-135 dispersed
Bpe02g00548 Bpe-Chr2:3559863 Bpe04g00068 Bpe-Chr4:541394 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20894 PF03791 KNOX2 3.80E-20 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00548 - - csv:101217292 741.88