Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe02g00563 ATGGTACAATCAAGGAAGTTCAGAGGTGTCAGGCAGCGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCGCTACTGAAGAGAAGGGTATGGCTGGGGACGTTTGAGACGGCGGAGGCAGCGGCTCGGGCCTATGACCAAGCGGCTATATTGATGAACGGCCAAAACGCCAAGACCAATTTTCCTAACTCAAACAATCAAAATGATGACCAAAAGAATGGGGATGGATCTCCATTATCACCGAAGGCACTTTCAGAGCTTCTAAGCACAAAGCTGAGAAAATGCTGCAAAGACCCATCTCCCTCTCTCACATGCCTGAGGCTGGACAGCGATAATTCTCACATCGGGGTGTGGCAGAAGCGTGCCGGAGCTCGTGCAGCCTCCAATTGGGTCATGAGGATCGAGCTCGGGAATAAAATCTCTCCTCATTCCGAGATTGAGTCGCCATTGTCGATTGGAGAACCGAAGAGTGAAATGGTTGAAGGCGAAAGCAAAATGGATGAGGAGGATAGAATTGCGATTCAAATGATCGAGGAGTTGCTCAATTGGAATTGTCCAGAAGAAAAGGGTAGTAGTCTTCCTCATCTGAGTTGCTGA 600 49.83 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSNNQNDDQKNGDGSPLSPKALSELLSTKLRKCCKDPSPSLTCLRLDSDNSHIGVWQKRAGARAASNWVMRIELGNKISPHSEIESPLSIGEPKSEMVEGESKMDEEDRIAIQMIEELLNWNCPEEKGSSLPHLSC 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3632254 3633048 + Bpe008404.4 Bpe02g00563 98712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe02g00563 199 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bpe02g00563 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 188 - -
Bpe02g00563 199 MobiDBLite consensus disorder prediction 57 76 - -
Bpe02g00563 199 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bpe02g00563 199 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Bpe02g00563 199 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bpe02g00563 199 MobiDBLite consensus disorder prediction 57 83 - -
Bpe02g00563 199 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Bpe02g00563 199 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bpe02g00563 199 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Bpe02g00563 199 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bpe02g00563 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 188 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00563 Bpe04g00054 CCT
Bpe02g00563 Bpe04g00054 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00563 Bpe-Chr2:3632254 Bpe13g01056 Bpe-Chr13:16205097 1.10E-79 dispersed
Bpe02g00563 Bpe-Chr2:3632254 Bpe02g02027 Bpe-Chr2:21876454 1.55E-78 wgd
Bpe02g00563 Bpe-Chr2:3632254 Bpe04g00054 Bpe-Chr4:470637 6.76E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
20896 PF00847 AP2 2.20E-12 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe02g00563 - - mcha:111006480 280.411